Protein Info for GFF4450 in Variovorax sp. SCN45

Annotation: Rod shape-determining protein RodA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 384 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 54 to 72 (19 residues), see Phobius details amino acids 78 to 100 (23 residues), see Phobius details amino acids 110 to 132 (23 residues), see Phobius details amino acids 139 to 159 (21 residues), see Phobius details amino acids 164 to 183 (20 residues), see Phobius details amino acids 188 to 207 (20 residues), see Phobius details amino acids 289 to 309 (21 residues), see Phobius details amino acids 321 to 348 (28 residues), see Phobius details amino acids 354 to 376 (23 residues), see Phobius details TIGR02210: rod shape-determining protein RodA" amino acids 22 to 379 (358 residues), 407.3 bits, see alignment E=3e-126 PF01098: FTSW_RODA_SPOVE" amino acids 28 to 380 (353 residues), 326.4 bits, see alignment E=1.1e-101

Best Hits

KEGG orthology group: K05837, rod shape determining protein RodA (inferred from 96% identity to vpe:Varpa_0998)

Predicted SEED Role

"Rod shape-determining protein RodA" in subsystem Bacterial Cytoskeleton or Peptidoglycan Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (384 amino acids)

>GFF4450 Rod shape-determining protein RodA (Variovorax sp. SCN45)
MSAVFNQPSLARRIAPIFQGFDGFLAFAVLLLAFAGLLTMYSSGYDHGTRFVDHGRNMLL
AGFIMFVVAQVPPQKLMLAAVPLYAMGVALLVAVALFGITKKGAQRWINLGMVIQPSEIL
KIAMPLMLAWWFQRREGQLRPLDFVVATVLLAVPVGLIMKQPDLGTSLLVLAAGLAVIFF
AGLPWKLIVPPVVIGAVAITLIVSFESRLCADGVDWRVLHDYQKQRVCTLLDPSKDPLGK
GFHIIQGMIAIGSGGVGGKGFMQGTQTHLEFIPERTTDFIFAAYSEEFGLMGNLMLISAF
ILLIFRGLAIATNATTLFSRLLAGAVTMIFFTYAFVNMGMVSGILPVVGVPLPFISYGGT
AMVTLGLGLGILMSIARARKLAQN