Protein Info for GFF4429 in Variovorax sp. SCN45

Annotation: Inner membrane protein YpjD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 271 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 38 to 56 (19 residues), see Phobius details amino acids 62 to 82 (21 residues), see Phobius details amino acids 94 to 114 (21 residues), see Phobius details amino acids 124 to 146 (23 residues), see Phobius details amino acids 175 to 195 (21 residues), see Phobius details amino acids 215 to 231 (17 residues), see Phobius details amino acids 243 to 262 (20 residues), see Phobius details PF01578: Cytochrom_C_asm" amino acids 45 to 264 (220 residues), 88.9 bits, see alignment E=1.9e-29

Best Hits

KEGG orthology group: None (inferred from 92% identity to vpe:Varpa_1018)

Predicted SEED Role

"CcsA-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (271 amino acids)

>GFF4429 Inner membrane protein YpjD (Variovorax sp. SCN45)
MILAIPSPLGVALGIATAVAYGFVAAAGARMSRQATQWALGIAWLLHALALAHGLIGSEP
RFGFAPALSVTAWLVLTVYAVESRMYPQLKVRRALAWLGAAAVLLAILFAGSPLHVSASP
WLPLHLALGIASYGLFGAAVVHAWLITRAEKQIRLATAEPHQGGVPLLTLERLTFRFVTA
GFVLLSATLLAGLLFSEQLYGTAGRFWKWDHKTTFSVLAWLTFAVLLIGRARFGWRGRTA
RRVLYAGSALLLLAYVGSRFVLEVVLARPPV