Protein Info for PS417_22630 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 310 PF00111: Fer2" amino acids 12 to 75 (64 residues), 57.3 bits, see alignment E=1.8e-19 PF00970: FAD_binding_6" amino acids 101 to 174 (74 residues), 24.8 bits, see alignment E=3.3e-09 PF00175: NAD_binding_1" amino acids 195 to 261 (67 residues), 31.5 bits, see alignment E=3.6e-11

Best Hits

KEGG orthology group: None (inferred from 91% identity to pfs:PFLU4951)

Predicted SEED Role

"2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases" in subsystem Central meta-cleavage pathway of aromatic compound degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UK78 at UniProt or InterPro

Protein Sequence (310 amino acids)

>PS417_22630 hypothetical protein (Pseudomonas simiae WCS417)
MPELYVGERHWSVSSGSNLLDALNQAGAAVPYSCRAGSCHACLVRCEGEVEDKQPEALSP
AQRQDGWRLACQCQVRGDLRVETFDPTRDGLPAQVVGVDWLSPNVLRLRLQPERGLRYRA
GQHLVLWAGQVARPYSLASLPQEDAFLEFHLDCRLPGEFSDLARQLQVGDRLRLGELRGG
ALQYDPDWQRRPLWLLASGTGLGPLWGVLREALRQDHQGDIRVIHLAHDADGHYLAEPLA
QLAAQHPNVTVELWTAAQATQALAQLRLVSRQTLALLCGHPASVEAFSKRLFLAGLPRNQ
LLADVFLPRG