Protein Info for GFF442 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 transmembrane" amino acids 30 to 49 (20 residues), see Phobius details amino acids 58 to 79 (22 residues), see Phobius details amino acids 116 to 135 (20 residues), see Phobius details amino acids 143 to 161 (19 residues), see Phobius details amino acids 168 to 190 (23 residues), see Phobius details amino acids 217 to 239 (23 residues), see Phobius details amino acids 259 to 278 (20 residues), see Phobius details amino acids 307 to 329 (23 residues), see Phobius details amino acids 359 to 379 (21 residues), see Phobius details amino acids 385 to 409 (25 residues), see Phobius details amino acids 427 to 447 (21 residues), see Phobius details amino acids 453 to 474 (22 residues), see Phobius details PF13520: AA_permease_2" amino acids 30 to 453 (424 residues), 108.7 bits, see alignment E=3.5e-35 PF00324: AA_permease" amino acids 44 to 455 (412 residues), 100.2 bits, see alignment E=1.1e-32

Best Hits

KEGG orthology group: None (inferred from 94% identity to xau:Xaut_4032)

Predicted SEED Role

"amino acid permease-associated region"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (500 amino acids)

>GFF442 hypothetical protein (Xanthobacter sp. DMC5)
MAEGSKSGVTYTTVDVSYFEQRALKRHARVWSLWALGVGAVISGHFSGWNLGIASGGWGG
MFIAAVIIAIMYLGLTFSIAEMSPALPHTGAAYSFARTTMGPWGGFVTGLCENVEYVITP
AVVVSFIGSYMGSIFGTPPAFQPVYWIFGYIIFVGLNIAGVELSFRVTLVVTLAALACLV
AFWVSAIPVANFSRWALNIGVGPDGTAVELPNGGGPFLPFGIGGALAALPFAVWLFLAIE
QLPLAAEESVDPKTDMPKGIMLGMATLIVSAFMILWLNSSVANGSFGLSTSLEPLLDGFK
AIYGDGLAKLLALVAVIGLIASFHTIIYAQGRQIYSLSRAGYFPRGLSVTHGGRKTPHVA
MVAGALVGLVIMIGIWFALGAEAGAAAIGGTLLNMAVFGAMLSYVMQAISFILMRKNMPH
IERPYKSPFGIPGAVATIVIAIVTIWFQLSDPIYRNGVIGVAIWFAAGIAYFGIWGRHKL
VLSPEEEFALSKGTAEYKSY