Protein Info for PS417_22595 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 389 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 258 to 276 (19 residues), see Phobius details PF14258: DUF4350" amino acids 44 to 235 (192 residues), 85.2 bits, see alignment E=3.5e-28

Best Hits

KEGG orthology group: None (inferred from 90% identity to pfs:PFLU4944)

Predicted SEED Role

"FIG00955538: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See U1UZH5 at UniProt or InterPro

Protein Sequence (389 amino acids)

>PS417_22595 hypothetical protein (Pseudomonas simiae WCS417)
MNRPLLWVGLLLACLLGAAGYYAWSKAIPYDEVVDRGPSPEALANPYLAAEHFLREQGLA
VEQANSLERLTTLPGKGNSLLLLGERSNMSPRQVEQLLDWTQSGGHLLLVAEALWDEETG
RSGDLLLDRLQIHQALSDEPEEPAPSSKKSLEKKAPDLTKLYVDNENPSAYFSFDTDFNL
TDPKHLAQFSANSSRSSHLMQLDLGKGHVTVITDSDLWKTPNIGKHDNAWLLWYLNQGTA
VTLLFNSDFDDLLSLLMRYFPQALVALISLIALALWRAGMRQGPTRPPASNARRQLQEHL
KASADFLLRRSGQGTLLHALQRDILRAVRHRHPGFEHLDNAEQWRVLEHLTRQPSHVISQ
ALGPLPAKRLSSADFSRQVACLQTLRNAL