Protein Info for GFF441 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: BAX protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 190 PF01832: Glucosaminidase" amino acids 58 to 183 (126 residues), 70.5 bits, see alignment E=1.1e-23

Best Hits

KEGG orthology group: K03796, Bax protein (inferred from 100% identity to spq:SPAB_04550)

Predicted SEED Role

"BAX protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (190 amino acids)

>GFF441 BAX protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MPYITSQNAAITADRNWLISKQYQNRWSPSERARMKDIAKRYKVSWSGNTRRIPWNTLLE
RVDIIPTSMVATMAAAESGWGTSKLARSNNNLFGMKCTKGRCTNTPGKVKGYSQFASVEE
SVSAYVANLNTHPAYSSFRKSRAQLRKADQEVTATAMIHKLKGYSTQGSRYNNYLFAMYQ
DNQRLIAAHM