Protein Info for GFF4404 in Variovorax sp. SCN45

Annotation: Mobile element protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 510 PF13007: LZ_Tnp_IS66" amino acids 36 to 110 (75 residues), 55.6 bits, see alignment E=1.5e-18 PF13005: zf-IS66" amino acids 117 to 159 (43 residues), 54.4 bits, see alignment 2.6e-18 PF03050: DDE_Tnp_IS66" amino acids 173 to 459 (287 residues), 344.9 bits, see alignment E=8.4e-107 PF13817: DDE_Tnp_IS66_C" amino acids 466 to 503 (38 residues), 63.5 bits, see alignment 3.3e-21

Best Hits

KEGG orthology group: None (inferred from 91% identity to dia:Dtpsy_1401)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (510 amino acids)

>GFF4404 Mobile element protein (Variovorax sp. SCN45)
MVVEPQSLDSLSAEQLRELTARLMVQVRHQSALLEKLTHENALLKRMKFAAQSERFNPEQ
KSLLEDEIEADLAAVASEIDALTQTQAPATPDKKQAKRLPLPAHLPRREVRHEPASTTCA
CGCQMKRVGEDVAEKLDYMPGVFSVERHIRGKWACARCESITQAPVEAHVIDKGIPTTGL
LAQVLVGKYADHLPLYRQEAIFGRAGLAIPRSTLAQWVGTCGVRLQPLVDALKTEILGHR
VLHADETPVAMLKPGDGKTHRAYLWAYAPGAFESIKAVVYDFCESRSGEHARHFLGHGTD
KAWKGSLTCDDFSGYKALIASGVTEVGCLAHARRKFFDLHAANQSQIAEFALQQFARVYE
IEREVKELGSEQRQAVRQQQTRPILDALHEWMTLQRRQVPDGSATAKALDYSLRRWDALT
RFADDGQLPVDNNWIENQIRPIAIGRNNWLFAGSLRAGQRAAAVMSLIQSARMNEHDPYA
YLKDVLTRLPTHKASRIDELLPHRWQPTGL