Protein Info for GFF4393 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 346 signal peptide" amino acids 14 to 17 (4 residues), see Phobius details amino acids 37 to 39 (3 residues), see Phobius details transmembrane" amino acids 18 to 36 (19 residues), see Phobius details amino acids 59 to 76 (18 residues), see Phobius details amino acids 98 to 118 (21 residues), see Phobius details amino acids 140 to 167 (28 residues), see Phobius details amino acids 175 to 197 (23 residues), see Phobius details amino acids 240 to 262 (23 residues), see Phobius details amino acids 270 to 295 (26 residues), see Phobius details amino acids 316 to 338 (23 residues), see Phobius details PF03824: NicO" amino acids 102 to 213 (112 residues), 66.2 bits, see alignment E=1.7e-22 amino acids 220 to 337 (118 residues), 57.7 bits, see alignment E=6.5e-20

Best Hits

KEGG orthology group: None (inferred from 80% identity to xau:Xaut_0391)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (346 amino acids)

>GFF4393 hypothetical protein (Xanthobacter sp. DMC5)
VSASTAAVTGRMRRAGLIALGLGAALLFGLLVALVLYPDLAFAQGFGPPGGGGPKATPFG
LGGGGAPPSGITGFILAKQSEFYRSLVQAVRAAKQDGHATFLLAGLSFAYGVFHAAGPGH
GKAVISSYLLADGGTLRRGAVLSLAAGMVQAVAAILFVGILALVLGATAVSMAQAMTVVE
VAAYGGIGLFGLYLAIVKGRALVAAARGDAAHVHAADCDCGDSHAPDPMLLAGQGGWKRA
AVAVVSAGARPCSGAILVLTFALSQGVFMSGVAAAFAMGLGTAATVTAIAAIAVYGKRLA
VRIAGRDTKWSVMARLGVELGAALLVMLFGFGLLTGYLESERLLPG