Protein Info for GFF4393 in Variovorax sp. SCN45

Annotation: Uncharacterized ABC1 family protein XCC_1720

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF03109: ABC1
  • amino acids 99 to 365 (267 residues), 238.1 bits, E=4.2e-75

Best Hits

KEGG orthology group: K03688, ubiquinone biosynthesis protein (inferred from 90% identity to tmz:Tmz1t_2071)

Predicted SEED Role

"Ubiquinone biosynthesis monooxygenase UbiB" in subsystem Ubiquinone Biosynthesis

MetaCyc Pathways

• superpathway of chorismate metabolism (42/59 steps found)
• superpathway of ubiquinol-8 biosynthesis (early decarboxylation) (7/12 steps found)
• ubiquinol-8 biosynthesis (early decarboxylation) (4/8 steps found)

Protein Sequence (582 amino acids)

>GFF4393 Uncharacterized ABC1 family protein XCC_1720 (Variovorax sp. SCN45)
MFWQALSAMRDLRRLHEIASILVRYGFGDMVRRIGLSKALERAGTALHWSEAADFAHMTP
PERVRRALEEMGPTFVKLGQVLATRVDLLEPEWTAEFGKLQDSAPPAPWAAVYQQLSEDL
GAPPEEIFAAFDPEPLAAASIAQVHRARLDDGGEVVVKVRRPGIRHILEADLRWLARLAE
LAETESAEWRVLHPREMVRQFAQSLRNELDFADECRNAERIAGNFTGYADQDAPPVVPGK
EKPDADGAPPIIVIPRVYWQWTGERVCVQEFIGGISGRRLQAVDQAGLDRKVLARRGASA
VLKMIVEDGLFHADPHPGNVFYLPGNRIAFIDFGMVGRLAEERRDQLIRLLLGLVRNDAG
GVADVMLEWTSDGVANEQDLLLEVRSFIDRYHGVPLKQLRLSAMLSDLVAIPRQHHLVLP
NDLSLLIKAFVTLEGLGRELDPGFDMANHALPLLERAMYARYSPAALLRRGRRAAGDIFS
LLAGLPQDLSRLLRAARRGRLEVHIDVTHLRRVGDQLDRAVSRLAISIVTAALIVGSAIV
MTVEREPSLPGLPSFGLLGFIAAVIGGIWVLVSIWRGGKGGT