Protein Info for GFF4355 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 167 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details amino acids 33 to 43 (11 residues), see Phobius details transmembrane" amino acids 25 to 32 (8 residues), see Phobius details amino acids 54 to 76 (23 residues), see Phobius details amino acids 107 to 125 (19 residues), see Phobius details amino acids 137 to 156 (20 residues), see Phobius details PF03350: UPF0114" amino acids 12 to 124 (113 residues), 98.6 bits, see alignment E=1.4e-32

Best Hits

Swiss-Prot: 37% identical to Y1474_TOLAT: UPF0114 protein Tola_1474 (Tola_1474) from Tolumonas auensis (strain DSM 9187 / TA4)

KEGG orthology group: None (inferred from 72% identity to sno:Snov_3869)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (167 amino acids)

>GFF4355 hypothetical protein (Xanthobacter sp. DMC5)
MRKAIVRLVTLSRWAMVPLFAGLSVALALLVVAFLLELVRFAIALPSMNETHVIMGILTL
IDLALVGGLLVVVISSGYENFVEKIDRADTPSSPVWMTRISFSGLKLKLFASLMAITGIT
LLKALMRLETDVSEAQVRWLVVANVIFVAAYGVLAMTDRFHPSSRED