Protein Info for GFF4354 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: UPF0125 protein yfjF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 109 PF03658: Ub-RnfH" amino acids 1 to 84 (84 residues), 77.6 bits, see alignment E=3.9e-26

Best Hits

Swiss-Prot: 35% identical to RNFH_CUPNJ: Protein RnfH (rnfH) from Cupriavidus necator (strain JMP 134 / LMG 1197)

KEGG orthology group: K09801, hypothetical protein (inferred from 55% identity to rfr:Rfer_2290)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (109 amino acids)

>GFF4354 UPF0125 protein yfjF (Hydrogenophaga sp. GW460-11-11-14-LB1)
MKITLMHAPAPREVVEAVLDVPEGCTLRQALEQAGWLQRFPAIQAEPLALGVWGRKAGWE
RVLREGDRVEVVRGLRVDPKVARRERFMGQGARSTGLFARRRPGSKAGY