Protein Info for GFF4337 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: FIG001943: hypothetical protein YajQ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 163 PF04461: DUF520" amino acids 2 to 162 (161 residues), 216.8 bits, see alignment E=9.2e-69

Best Hits

Swiss-Prot: 100% identical to YAJQ_SALPB: UPF0234 protein YajQ (yajQ) from Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)

KEGG orthology group: K09767, hypothetical protein (inferred from 98% identity to ses:SARI_02499)

Predicted SEED Role

"FIG001943: hypothetical protein YajQ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (163 amino acids)

>GFF4337 FIG001943: hypothetical protein YajQ (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MPSFDIVSEVDLQEARNGVDNAVREVESRFDFRGVEATIELNDANKTIKVLSESDFQVNQ
LLDILRAKLLKRGIEGASLDVPDEFVHSGKTWYVEAKLKQGIESAVQKKIVKLIKDSKLK
VQAQIQGEEIRVTGKSRDDLQSVMALVRGGDLGQPFQFKNFRD