Protein Info for GFF4331 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Putative activity regulator of membrane protease YbbK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 141 transmembrane" amino acids 6 to 36 (31 residues), see Phobius details amino acids 38 to 38 (1 residues), see Phobius details amino acids 46 to 67 (22 residues), see Phobius details PF01957: NfeD" amino acids 85 to 140 (56 residues), 29.5 bits, see alignment E=3.5e-11

Best Hits

KEGG orthology group: None (inferred from 68% identity to adk:Alide2_3044)

Predicted SEED Role

"Putative activity regulator of membrane protease YbbK" in subsystem YbbK

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (141 amino acids)

>GFF4331 Putative activity regulator of membrane protease YbbK (Hydrogenophaga sp. GW460-11-11-14-LB1)
MSDSTVWWLLAGAAVALELFTGTFYLLMLAVGMAAGALAAHAGLGTTAQLIAAAVVGSAA
VVGWYFIKKRGAGDPSVRSLRSVNLDIGEVLQIDEWHADGTASVKYRGAQWTVIQRPGNP
PVPGAYRVAELVGNRLLVDKV