Protein Info for GFF4312 in Variovorax sp. SCN45

Annotation: Citronellol dehydrogenase; Citronellal dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 289 PF00106: adh_short" amino acids 15 to 198 (184 residues), 151.7 bits, see alignment E=2.7e-48 PF08659: KR" amino acids 16 to 126 (111 residues), 47.5 bits, see alignment E=3e-16 PF13561: adh_short_C2" amino acids 24 to 254 (231 residues), 160.4 bits, see alignment E=8.6e-51

Best Hits

KEGG orthology group: K13774, citronellol/citronellal dehydrogenase (inferred from 64% identity to pol:Bpro_5261)

Predicted SEED Role

"Citronellol and citronellal dehydrogenase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (289 amino acids)

>GFF4312 Citronellol dehydrogenase; Citronellal dehydrogenase (Variovorax sp. SCN45)
VPYQSIYRPDLFAGQTIIVTGGGSGIGRCTAHELASLGAHVVLVGRSIEKVEAVRSEIEQ
DGGSATALACDIRDEAAVGATIDAVLQQRGRLDALVNNAGGQYRSPMKSISTKGFEAVVR
NNLTGGFIFMREAYNRYMEAHGGAIVNMIADIWHGWPDMAHSGASRGGMLTLSETAACEW
AGSGVRVNTVAPGGIASSGFDTYTPEAKAKILEFTDVVPLKRFGTEAEVSGAIVYLLSPA
AAYITGTCIRIDGGTPNLRNNWKLEPSSRNRAFMGFHRAELPELLRQRD