Protein Info for GFF4310 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Transcriptional regulator, DeoR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 230 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details PF08279: HTH_11" amino acids 7 to 60 (54 residues), 60.4 bits, see alignment E=2.4e-20 PF13280: WYL" amino acids 137 to 226 (90 residues), 78 bits, see alignment E=1.8e-25

Best Hits

KEGG orthology group: None (inferred from 100% identity to sec:SC0452)

Predicted SEED Role

"Transcriptional regulator, DeoR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (230 amino acids)

>GFF4310 Transcriptional regulator, DeoR family (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MTRRADRLFQIVQILRGRRLTTAALLAQRLAVSERTIYRDIRDLSLSGVPVEGEAGSGYR
LMAGFDLPPLMLTHRESEALMVAIRLLKTWGGDSLSRELESAQEKVLAILPEESRRKAEQ
TRIYAPDLGTSPHSRSAFDLIHQAVSAQQVLALHYRDEAGHLSSRDIQPLGLFFWGEHWL
LVAWCERREDYRCFRLDRCLQITPLNRRFRETIDRSLRDFLRKVEHEKMP