Protein Info for GFF4304 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 278 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 31 to 49 (19 residues), see Phobius details amino acids 55 to 77 (23 residues), see Phobius details amino acids 85 to 104 (20 residues), see Phobius details amino acids 123 to 139 (17 residues), see Phobius details amino acids 170 to 189 (20 residues), see Phobius details amino acids 202 to 232 (31 residues), see Phobius details amino acids 244 to 263 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 5 to 254 (250 residues), 98.5 bits, see alignment E=2e-32

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 90% identity to xau:Xaut_0045)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (278 amino acids)

>GFF4304 hypothetical protein (Xanthobacter sp. DMC5)
MSGYLTGVLVVLAFNVIAAYAVYLPLAAGQLNLGIAGFMAIGAYASAFLTNEYMWPMWAA
IPLGAGLAGLVGLLIGVPVLRTHGIYLAMATFALGQVISAIFLNLEVVGGAAGYPVTDYA
GPYVVYAAAAGVVVLMLLVSRTRFALCLTAVKSDATVADLLGVSVRGMKVAAFALGAAVA
GFGGGLYAHHYSFVEAQHFNVLLSVFTVLYVLFGGTQTVWGPLVGAAFFTLVPELLRASD
QWRYALFAVFIILFMAVRPQGLVTSSLFRLFRRKAEAA