Protein Info for GFF4298 in Pseudomonas sp. DMC3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1047 transmembrane" amino acids 36 to 54 (19 residues), see Phobius details amino acids 166 to 184 (19 residues), see Phobius details PF00912: Transgly" amino acids 157 to 352 (196 residues), 58.6 bits, see alignment E=5.6e-20 PF00905: Transpeptidase" amino acids 844 to 947 (104 residues), 23.5 bits, see alignment E=3.1e-09

Best Hits

KEGG orthology group: None (inferred from 90% identity to pfo:Pfl01_4564)

Predicted SEED Role

"Membrane carboxypeptidase (penicillin-binding protein)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1047 amino acids)

>GFF4298 hypothetical protein (Pseudomonas sp. DMC3)
MGALWQTDSSKTVVQTESVNEAPVPEKPRRNRHGWKAFWLLFLIIAVVVGLAASKEMRTS
RFQARELSQYAASLTYKLEPGPSEAIRYPGNGPFDLRLGYSSLDEFLPRLLKRNYVITEQ
TRFSPALLGYTDKGLFVPYSEKIQAGLSITDCRGAPLYRYNYPQQLYADFAAIPPVVVSS
LLFIENRFLLDPKQPLANPAVDWPRFGMAAWSQVAKLLRLPGQSAGGSTLATQLEKYRHS
PDGLTVSGAEKIRQMVSASVRAYQDGPETLGSRQNIVRDYLNSVPLSAVPGHGEVHGMAE
GLRVWYGSDFNKANEQLNSPKTDPQTMAAKGLALREMLSLMIAQRRPSHFLTKGRDELAS
LTDSHLRLLKQNGVIDSALADAALASTVSYRDWQTQPTMQPIETNKGISVARSRLASMLN
RPLYDLDRLDLSATSTLQGDLQTQATAYLKKLADPAYAAEIGLLGERLLTPTSTTQVRYS
FTLFELTPDGSRVRVQTDSTDQPFDINEGSKLELGSTAKMRVLTTYLQIVAELHDKYGAM
SGPELKKVEVPDQDRLSRWVIDYLIQNKDHDLSKLLGAALDRKYSASPGEAFFTGGGLHR
FNNFRKEDNGRLPTLRDSLRESINLPFIRLMRDIVRYTTYSGPNGELLKDDRDPRRQEYL
ASFADREGTSFLLKFWKKYKNKDTQARLETFLESIRPTPIRMAAVHRYLLPDASQEDFNS
FVRAHLKGAKLKEKLTDDRLIRLYDSYGPGSYDLPDQGFIAKVHPLDLWMMGYLLHHPEA
TFSEIVKASHFERQEVYSWLFKSRHKGARDSRIRTMLEIEAFLDIHQRWQKVGYPFDHLV
PSLATAIGSSGDRPAALAELIGTILNDGVRMPTLRIDSLHFAADTPYETRLVNDPHVGKR
VMPVEVARAMREALSQVVDAGTAKRLSGSFKLPDGTPLAMGGKTGTGDNRIAAIGSGGRI
ISSKSINRTATFVFYIGDHHFGTLTAFVPGRSAENFKFTSALPTQVLKGMAPILTPYLQP
GSDSQCRPAENPPVVTTGPAQLAILSG