Protein Info for PS417_02185 in Pseudomonas simiae WCS417

Annotation: type IV secretion protein Rhs

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 658 TIGR03361: type VI secretion system Vgr family protein" amino acids 10 to 521 (512 residues), 609.5 bits, see alignment E=4.6e-187 TIGR01646: Rhs element Vgr protein" amino acids 22 to 505 (484 residues), 399.9 bits, see alignment E=1.9e-123 PF05954: Phage_GPD" amino acids 30 to 322 (293 residues), 273.7 bits, see alignment E=2e-85 PF04717: Phage_base_V" amino acids 387 to 453 (67 residues), 47.2 bits, see alignment E=2.3e-16

Best Hits

KEGG orthology group: K11904, type VI secretion system secreted protein VgrG (inferred from 85% identity to pfs:PFLU0453)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TYX2 at UniProt or InterPro

Protein Sequence (658 amino acids)

>PS417_02185 type IV secretion protein Rhs (Pseudomonas simiae WCS417)
MFAPANQSAFTLTLDGEPSEFKVFEFSGIESISQPYRFDIELVSEQPDLDLESLLHRQVY
LGFDDRGRGVHGLVYRMAQGDSGRRLTRYQMTLVPQLAYLGHSSHQRIFQHKTVPQIVAQ
VLEGQGIQRDRFEFRLSGTYPEREYCVQFGETDLAFIQRLCAELGIHYHFQHSSAGHLLV
FGDDQTVFVQADPPTPYTPGSGMVADTPVIKRFAVQVQARTTGVNLRDYDFRKPSLALES
EVTGEQLPPLEAQVYPGHFNDRAHGKYLAQRGLERHRSDYRVARGSGDEPALGSGRFLKL
AGHPREDWNDLWLVTHVTHEGLQPQVLEESVTEVAGGDFRQGYRNEFSATPWDAIFRPPM
PEQPRPTIAGYQNAVVTGPADSEIHCDEYGRVKVQLVWDRDGEHNDHSSCWLRVASGWAH
DRYGSVLIPRVGMEVLVGFVNGDMDMPLVMGCLPNAATQVPLDLPADKTRSVFRSQSSPG
GGGYNELRIEDRKGAEEIYLRAQRDWTQHVLHDLRVNVDGESHHELQGEELRITHGNRLT
DLKQDDHLMVGGSRQVRAGQTIQIGAGQSVVIEGGATVTIQAGGQSITLCAGGIFSSVPI
QLGSAPAATAAPLTPGLKETVLAVIPAPLSRVQVASLKRSAPFCEECERCKNGQCGLI