Protein Info for GFF4284 in Pseudomonas sp. DMC3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3500 4000 4500 5000 5512 PF20579: LapA" amino acids 174 to 271 (98 residues), 86.2 bits, see alignment (E = 6.1e-28) amino acids 273 to 370 (98 residues), 124.7 bits, see alignment (E = 6.1e-40) amino acids 373 to 470 (98 residues), 116.4 bits, see alignment (E = 2.3e-37) amino acids 473 to 570 (98 residues), 116.9 bits, see alignment (E = 1.6e-37) amino acids 573 to 670 (98 residues), 116.4 bits, see alignment (E = 2.3e-37) amino acids 673 to 770 (98 residues), 116.9 bits, see alignment (E = 1.6e-37) amino acids 773 to 870 (98 residues), 115.5 bits, see alignment (E = 4.3e-37) amino acids 873 to 970 (98 residues), 115.8 bits, see alignment (E = 3.5e-37) amino acids 973 to 1070 (98 residues), 116 bits, see alignment (E = 3.1e-37) amino acids 1073 to 1171 (99 residues), 130.7 bits, see alignment (E = 8e-42) amino acids 1173 to 1270 (98 residues), 80.5 bits, see alignment (E = 3.5e-26) amino acids 1273 to 1371 (99 residues), 132.5 bits, see alignment (E = 2.2e-42) amino acids 1373 to 1471 (99 residues), 85.8 bits, see alignment (E = 7.8e-28) amino acids 1473 to 1571 (99 residues), 129.4 bits, see alignment (E = 2e-41) amino acids 1574 to 1671 (98 residues), 118.1 bits, see alignment (E = 6.9e-38) amino acids 1673 to 1770 (98 residues), 106.5 bits, see alignment (E = 2.9e-34) amino acids 1773 to 1871 (99 residues), 125.4 bits, see alignment (E = 3.6e-40) amino acids 1873 to 1970 (98 residues), 81.5 bits, see alignment (E = 1.7e-26) amino acids 1973 to 2071 (99 residues), 129.5 bits, see alignment (E = 1.9e-41) amino acids 2073 to 2171 (99 residues), 84.2 bits, see alignment (E = 2.6e-27) amino acids 2173 to 2271 (99 residues), 128.5 bits, see alignment (E = 3.9e-41) amino acids 2273 to 2371 (99 residues), 85.9 bits, see alignment (E = 7.3e-28) amino acids 2373 to 2471 (99 residues), 127.6 bits, see alignment (E = 7.3e-41) amino acids 2473 to 2570 (98 residues), 79.2 bits, see alignment (E = 9e-26) amino acids 2573 to 2671 (99 residues), 131 bits, see alignment (E = 6.4e-42) amino acids 2673 to 2770 (98 residues), 80.9 bits, see alignment (E = 2.7e-26) amino acids 2773 to 2871 (99 residues), 129.6 bits, see alignment (E = 1.7e-41) amino acids 2873 to 2970 (98 residues), 80.9 bits, see alignment (E = 2.7e-26) amino acids 2973 to 3071 (99 residues), 128.7 bits, see alignment (E = 3.3e-41) amino acids 3073 to 3170 (98 residues), 80.2 bits, see alignment (E = 4.4e-26) amino acids 3173 to 3271 (99 residues), 129.9 bits, see alignment (E = 1.4e-41) amino acids 3273 to 3370 (98 residues), 80.3 bits, see alignment (E = 4.2e-26) amino acids 3373 to 3471 (99 residues), 130.9 bits, see alignment (E = 7e-42) amino acids 3473 to 3570 (98 residues), 78.5 bits, see alignment (E = 1.5e-25) amino acids 3573 to 3671 (99 residues), 127.9 bits, see alignment (E = 6.1e-41) amino acids 3673 to 3771 (99 residues), 82.4 bits, see alignment (E = 9.2e-27) amino acids 3773 to 3871 (99 residues), 129.6 bits, see alignment (E = 1.8e-41) amino acids 3873 to 3971 (99 residues), 82 bits, see alignment (E = 1.2e-26) amino acids 3973 to 4071 (99 residues), 130.2 bits, see alignment (E = 1.2e-41) amino acids 4073 to 4171 (99 residues), 83.5 bits, see alignment (E = 4e-27) amino acids 4173 to 4271 (99 residues), 131.2 bits, see alignment (E = 5.5e-42) amino acids 4273 to 4382 (110 residues), 47.3 bits, see alignment (E = 7.9e-16) PF03160: Calx-beta" amino acids 4289 to 4371 (83 residues), 30.3 bits, see alignment (E = 1.3e-10) PF00092: VWA" amino acids 5003 to 5124 (122 residues), 37.7 bits, see alignment (E = 9.2e-13) PF13519: VWA_2" amino acids 5005 to 5121 (117 residues), 36.2 bits, see alignment (E = 2.8e-12) PF00353: HemolysinCabind" amino acids 5280 to 5296 (17 residues), 18 bits, see alignment (E = 8.3e-07) amino acids 5349 to 5381 (33 residues), 32.8 bits, see alignment (E = 1.9e-11) amino acids 5373 to 5407 (35 residues), 30.6 bits, see alignment (E = 9.5e-11) TIGR03661: type I secretion C-terminal target domain (VC_A0849 subclass)" amino acids 5418 to 5498 (81 residues), 63.2 bits, see alignment (E = 2.1e-21)

Best Hits

Predicted SEED Role

"T1SS secreted agglutinin RTX"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (5512 amino acids)

>GFF4284 hypothetical protein (Pseudomonas sp. DMC3)
MSSVVAVVKSIVGQVFVVSPEGVRRVLVEGDRLYVGDQIDTGLSGAVSLELADGRMLDLG
RDTQWSASSPDSSTDLAEATAQAAPSVEELQQAIAAGVDPTTALESTAAGPTAAGTGGAA
GGGHSFVMLDATAGRVDPTIGFPTAGINSAGQVAQDTTGGLTTDTTTNALRDSTLSLSAT
PTITEAGGVLVYTATLTQAPLTDLTITLSNGAVIVIPAGATTGTVNVPLAPNDTVYNDPT
QIDVTVTGTSGGNGITVTPPTIPATTQVTDTVDTTTVTLTAGSSVTEGGQITYTATLTNP
AQTPVTVTLSNGSTITIGAGQTTGTVNVPTPANDVYNNGSTVTTTITGATGGNFENLVPN
PTPAVTTITDSVDNTGLTLTATNNIVEGGQITYTATLTNPAQTPVTVTLSNGSTITIAAG
ETVGTVNVPTAANDVYNNGSTVSTTITGATGGNFENLVPNTTPAVTTITDSVDNTGLTLT
ATNNIVEGGQITYTATLTNPAQTPVTVTLSNGSTITIAAGETVGTVNVPTAANDVYNNGS
TVSTTITGATGGNFENLVPSNTPAVTTITDSVDNTGLTLTATNNIVEGGQITYTATLTNP
AQTPVTVTLSNGSTITIAAGETVGTVNVPTAANDVYNNGSTVSTTITGATGGNFENLVPN
TTPAVTTITDSVDNTGLTLTATNNIVEGGQITYTATLTNPAQTPVTVTLSNGSTITIAAG
ETVGTVNVPTAANDVYNNGSTVSTTITGATGGNFENLVPSNTPAVTTITDSVDNTGLTLT
ATNNIVEGGQITYTATLTNPAQTPVTVTLSNGSTITIAAGETVGTVNVPTAANDVYSNGS
TVSTTITGATGGNFENLVPSTTPAVTTITDSVDDTGLTLTATNNIVEGGQITYTATLTNP
AQTPVTVTLSNGSTITIAAGETVGTVNVPTAANDVYNNGSTVTTTITGATGGNFENLVPS
NTPAVTTITDSVDDTGLTLTATNNIVEGGQITYTATLTNPAQTPVTVTLSNGSTITIAAG
ETVGTVNVPTAANDVYNNGSTVSTTITGATGGNFENLVPNTTPAVTTITDSVDDTGLSLS
ATGSVAEGGQITYTATLTNPAGTPVTVTLSNGSVITIDAGKTTGTVTVPAPADDVYKDAG
QVEVSIKDATGGNFENLVPNATPAVTEITDTVDTSTVKLSADTSVAEGGTVTYTATVGAP
VTGSPVVVTLANGQNITIAVGQTTGSITYTAPNDALTGNAPLTNSITGVSGGNYENLVAD
NTPVSTTVTDVADTTNLSLSATASVAEGGQITYTATLTNAAGSPVTVTLSNGAVITIQAG
ETSGNVTFPAPSDDVYKDSGSVQATITSATGGNFENLVSSTTPAVTQVTDTIDTSTVKLT
ADTSVAEGGTVTYTATVGAPVTGSPVVVTLANGQSITIAVGQTTGSVTAPVSNDVQIGHA
PLTNSITNVSGGNFENLVADKTPVSTTVTDTVDTTSVALTATGNVNEGGQITYTATLSNP
AGTPVTVNLSNGSVITIEAGKTTGTVTVPAPADDVYKDAGKVEVTIKDATGGNFENLVPS
TTPAVTNVADTVNTTHLTLSAESYVLEGSSITYTATLTNAAQTPVTVNLSNGQTITIEAG
KTSGSVTIAAPSDDVYKDVSKLTVTMTDASGGNFEKLDVSKTPVSTTVNDTVDTTALTLT
ASDTVSEGGQITYTATLSNPAGTAMTVTLANGAVINIAAGATSGSVNFPAPANTPYIDGS
NVRTAIASHSGGDFERVEADRSAVVTKVTDAVDTTNISLSATGSVAEGGSIVYTATLSNP
AGTAMSVTLSNGAVINIAKGASTGTATVAAPGDDVYKDAGKVDASITKTSGGNFENLVID
KTPAVTDVTDTIDNSTVSLTASASAIEGGVVVYTASVTAPVTGSPVLVTLSNGQTITIPV
GASSASVNFTAPNDAQAGGNTLSVKIDGASGGNYENLVADQTPAVTSVTDVADTTNLSLS
ATGSVAEGGSIVYTATLSNPAGTPVTVNLSNGAVITIEAGKTSGTVTVPAPADDVYKDAG
KVEVTIKGATGGNFENLVPSTTPAVTDVTDTVDTSTVKLTATETAAEGGTVTYTATVGAP
VTGSPVVVTLANGQNITIEVGKTSGSVSTTAPNDVLAGHAPLTNSITNVSGGNFENLVAD
QTPVSTIVTDTADTTNLSLSATGAVNEGGQITYTATLSNAAGTPVTVTLSNGATILIEAG
KTTGTVTVDAPKDDVYKDAGSVEATIQSATGGNFENLVTSTAPAVTTVNDTIDTTTVSLS
ATANVAEGETVVYTATVGAPVTGSPVIVSLSNGQTITIAVGETTGSVNYVAPNSPLAGGS
SLSVTIDGATGGNYEKLLVDGKSADTVVSDTTDTTNLNLSASDSVAEGGQITYTATLTNP
AGTPVTVTLSNGATITIDAGKTTGSVTVDAPKDDVYKDAGKVEVTIEGATGGNFENLVPS
AVPAVTNVTDTIDISTVKLTADTSVAEGGTVTYTATVGAPVTGSPVVVTLANGQTITIGV
GQTTGTATAVASNDALTGNAPITNSITGVTGGNFEDLVADKTPVSTSVTDVTDTTTLSLS
ASNSVAEGGQITYTATLTNAAGSPVTVTLSNGAVITIKAGETTGTATVPAPSDDVYKDAG
SVQATITSATGGNFENLVPSTAPAVTAVTDTIDTSTVKLTADTSVAEGGTVTYTATVGAP
VTGSPVVVTLANGQTITIGVGQTTGTATAVAANDALAGNAPITNSITNVSGGNFEDLVAD
KTPVSTSVTDVTDTTNLSLSATGSVAEGGSIVYTATLTNAAGSPVTVTLSNGAVITIKAG
ETSGTATVPAPSDDVYKDAGSVQATITSATGGNFENLEPSTAPAVTTVTDTIDTSTVKLT
ADTSVAEGGTVTYTATVGAPVTGSPVVVTLANGQTITIGVGQTTGTANAVAANDALTGNA
PITNSITGVTGGNFEDLVADKTPVSTSVTDVTDTTNLSLSATGSVAEGGSIVYTATLTNA
AGSPVIVTLSNGAVITIKAGETTGTATVPAPSDDVYKDAGSVQATITSATGGNFENLVPS
TTPAVTQVTDTIDTSTVKLTADTSVAEGGTVTYTATVGAPVTGSPVVVTLANGQTITIGV
GQTTGTATAVASNDALTGNAPITNSITGVTGGNFEDLVADKTPVSTTVTDVNDTTNLSLS
ASNSVAEGGQITYTATLTNAAGSPVTVTLSNGAVITIKAGETTGTATVPAPSDDVYKDAG
SVQATITSATGGNFENLVPSTAPAVTTVTDTIDTSTVKLTADTSVAEGGTVTYTATVGAP
VTGSPVVVTLANGQTITIGVGQTTGTATAVAANDALTGNAPITNSITGVTGGNFEDLVAD
KTPVSTTVTDVNDTTNLSLSASNSVAEGGQITYTATLTNAAGSPVTVTLSNGAVITIKAG
ETTGTATVPAPSDDVYKDAGSVQATITSATGGNFENLVPSTTPAITQVTDTIDTLTVKLT
ADTSVAEGGTVTYTATVGAPVTGSPVVVALANGQTITIGVGQTTGTATAVAANDALTGNA
PITNSITGVTGGNFEDLVADKTPVSTSVTDVTDTTNLSLSATGSVAEGGSIVYTATLTNA
AGSPVIVTLSNGAVITIKAGETTGTATVPAPSDDVYKDAGSVQATITSATGGNFENLVPS
TTPAITQVTDTIDTSTVKLTADTSVAEGGTVTYTATVGAPVTASPVVVTLANGQTITIGV
GQTTGTTTAVASNDALNGHAPITNSITGVTGGNFENLVADKTPVSTTVTDTVDTTNLSLS
ATGSVAEGGQITYTATLTNAAGSPVTVTLSNGAVITIKAGETTGTATVAAPSDDVYKDAG
SVQATITKATGGNFENLVPSTAPAVTTVTDTIDTSTVKLTADTSVAEGGTVTYTATVGAP
VTGSPVVVTLANGQTITIGVGQTTGTATAVASNDALTGHAPITNSITNVTGGNFENLVAD
KTPVSTTVTDTVDTTNLSLSATGSVAEGGQITYTATLTNAAGSPVTVTLSNGAVITIKAG
ETTGTATVAAPSDDVYKDAGSVQATISKATGGNFENLVPSTTPAVTSVTDTIDTTTVKLS
ATATAAEGGNVVYTATVGAPVTGSPVVVTLANGQNITIAVGQTTGTVTAVAPNDALTGNA
PLTNSITNVSGGNFENLVADKTPVSTTVTDTVDTTNLSLSATGSVAEGGQITYTATLTNA
AGSPVTVTLSNGAVITIDAGKTTGTVNVPAPADDVYKDAGTVQATISSATGGNFEKLVSS
TTPAVTSVTDTVDTTTVSITGSSSVAEGQTASYTVSLNHPAQTEVTLKIVYSGTAADGSD
FTGVYTVKIPAGASSAQFNVATLDDKITEGTENFVVKIDSATGGNFENLAVSSTNGSVST
SIIDNDAPPVLDLDANNSSGATGADYKVTFTENTPGAGVSIADTDLSITDPDSTMLTGAT
VVLTNRQDGDALNLGNSVNGITINANSTNGTVTLTLSGNATLADYMQAIKNISFTNSSEN
PSTVPRIITVTVTDGGNYSNTATTTVNVVAVNDAPVAAPSNVTGTEDTPLVLGWSTFGVS
DVDSPTSSLGIKITQLPGEGKLQYLDGSTWKDVANNQTFSKADIDAGKLRFLPDANESGT
NGYGGTSLGNNQADYAQIKFQPTDGQALGSTGTVKIDITPVADAPTVAVADNSVKSTGLI
KEVWTGLSGLGTDGSGANSTTLKNVIDAAGKPNSSANVTNVQSDGSVAAGTASKTSGLIY
LEAGKTYSFSGVADDSLLITIGGKSVASGTWGAGGAINGSFTPTTSGYYTLDIYHHNQSG
PGSYDVNLSVNGSTPIDLSNAGVPIYTGVQDLINSGVTVSDLHGTNGEGYYDGYKLNTGA
EGTTVKLSAISTALIDTDGSETLTVKISGAPVGSVLSDGAGHTFTVTASNGEANVTGWNL
GSLTVTPPTYYNGQFNLTVTSTSTEQVGGSASSTATIPVTVVPAVYNAVTATSGDDNVTG
TDANDIIVADIGGLTVVPGTNYNIAFMVDSSGSMSTSSLNAAKDSLTSVFNSLKQSLGGS
NSGTVNIFLVDFDTQVNKSVSVNLNDPNALTLLKAVLNSMGSGGGTNYEDVFKTTANWFQ
SADAVANTGAKNLTYFITDGQPTYYQTGEQTNPTLYGNVKLDSVVNTSNYKPGDTFSTYI
DNSHYLTINSAGSVVLQTYNSWWGWSSETLGTIHAQGDGTYELSNLAGTGNSTNSSTTSN
STSGFALLSGLSSVEAIGLNNDVSLNDLKPYDSDKTPQTNIDPKDLANSIIGHTEATMPG
NDTVNGGEGNDILFGDLVSFNGIAGEGYQAMQAFVAKETGVDVSKVSTSNVHQYITEHYQ
AFDVSGAHDGNDTLLGGAGNDILFGSGGTDLLDGGKGNDILLGGTGNDTLIGGQGNDILI
GGSGGDTFVWKSGDTGNDVIKDFKASEGDRIDLRDLLQGETGSTIDNFLKITTVDGTSSL
QVSSAGKFNSGDAAAATPDVTIKLEGNNWASANLHNLIAGSDPTIKVDHNNS