Protein Info for GFF4254 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: probable membrane protein NMA1176

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 134 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 65 to 84 (20 residues), see Phobius details amino acids 91 to 111 (21 residues), see Phobius details amino acids 116 to 133 (18 residues), see Phobius details PF01124: MAPEG" amino acids 8 to 133 (126 residues), 94.5 bits, see alignment E=3e-31

Best Hits

KEGG orthology group: None (inferred from 64% identity to pol:Bpro_2271)

Predicted SEED Role

"probable membrane protein NMA1176"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (134 amino acids)

>GFF4254 probable membrane protein NMA1176 (Hydrogenophaga sp. GW460-11-11-14-LB1)
MKLAGLTIAYWSVVVASLLPIGCAWLAKSGTFSKPRRDGGFDNKHPREWLARQSDWRARA
NAAQANSFEVLPFFIGAVIIAHQLGASQVRLDVLAFLFVVLRVLYIMMYVANLATARSLA
WTLGLIVNLAILFV