Protein Info for PS417_21730 in Pseudomonas simiae WCS417

Annotation: peptidase M14

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 370 PF24827: AstE_AspA_cat" amino acids 29 to 264 (236 residues), 39.1 bits, see alignment E=3.1e-14

Best Hits

KEGG orthology group: K06987, (no description) (inferred from 95% identity to pfs:PFLU4762)

Predicted SEED Role

"Succinylglutamate desuccinylase/aspartoacylase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UGA2 at UniProt or InterPro

Protein Sequence (370 amino acids)

>PS417_21730 peptidase M14 (Pseudomonas simiae WCS417)
MERVDHLLPWGHLGCERQLSVFRFGQGERKAYIQASLHADELPGMRAAWELKKRLTELEQ
QGALNGVIELVPVANPMGLGQLLQGSHQGRFEVGSGKNFNRDFVELSEPVAKLLTGKLGD
DPHANVRMIRQAMTDALNALPEPNSQLQGMQRILLSHACTADVVLDLHCDAEAALHMYAL
PQHWPQWRSLSAHLNVKVGLLAEDSGGSSFDEACSLPWLRLSQAFPEAQIPLACLATTLE
LGGQADTGRDEAIFHAEGILAFLAEQGLIKGEWPAPQFEPCEGLPFEGTELLFAPHAGVI
SYLRKTGEWVEKGEPIFEVIDPLEDRVSTLCAGTSGVLFAVERLRYAQAGFWLAKVAGRD
ALRHGRLLND