Protein Info for PS417_21715 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 1972 transmembrane" amino acids 268 to 284 (17 residues), see Phobius details amino acids 432 to 458 (27 residues), see Phobius details amino acids 496 to 513 (18 residues), see Phobius details PF20178: DUF6543" amino acids 83 to 339 (257 residues), 137.3 bits, see alignment E=1.5e-43 PF13855: LRR_8" amino acids 1869 to 1913 (45 residues), 27.6 bits, see alignment (E = 4.1e-10)

Best Hits

KEGG orthology group: None (inferred from 61% identity to pfs:PFLU4759)

Predicted SEED Role

"FIG00963434: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UJR5 at UniProt or InterPro

Protein Sequence (1972 amino acids)

>PS417_21715 hypothetical protein (Pseudomonas simiae WCS417)
MTSPIQLPDVSAYRDLHQDILMQAVPAWLPTLSPAKRTALNNVKPSIPQWYKTASPDAHD
TLKNRVSRAWEAQSKVDQAMGTLKSPQAFGAPLLAQLLKRRFGIERDVETTYLRLYIPLT
IPWFSVRSGAARTWTVSLLDAALHNFEAGEVFEASSGFITKPTSTGQFDTLPALDTRITV
AQFTALCRELDIGAKYQRYLEQFFDFNNPLAMASLQLKLKHSQAADLNVALKMAWMKGDL
HDDQSVTRLQRLLNTDDNPSTCYPLQCYNLSIMSTALTGIVLFAENIGSRHPVGVIAYIP
DDPYAPLKQYPTLVDFMTALGNNLRSAEYQQFFSRFISHEERGLFFADLNRRLSKVTWHP
HTRGDPLPSWRETPIDQPHLAFRATAISGDLFTHLFQTKLSKVFSDARAIAVSTASVDQR
VRWERWAIVQKVASAILQIAALIVAPFVPPVGLLMLGYSAYQMLDEAFEWVIDWAVGDVT
EAFAHLLSFVEQGIQLGLFIAGAPIAASALRTLLPADAIKFFDSFKPVALPDGKTRLWNP
DLAPYAHDLRLASHSYPNAQGLHAYNGKNILLLADKPFMVETDPITQQRYLQHPTRSNAY
RPPLLSNDKGAWLNELDTPLSWDSTTLMKRQGPRTAGLSDEQLVAARRISGTREGALRKM
YVNQHQPPPLLTDTVDRFRIDQALQDFIDQMNSDDPAIYRRADAQSQLHLLANLELWPKA
KTLRFLDSNGRTAWELPGEKNASVVQIHEAQLKQDVVLETLLEALDEPQRKTLLGEAFGD
PVTSLKNRALKLRKQLAGRAQSHRAELFDTRYQQLERPITPRQRAMIDNTPGLPLTAADA
LLDTANSQELKAVDEGKIPVRLSELAQSLRDEARVNHAYDGLYLDSTETLDTHRLALHSL
EKLPGWAGKKLRIEIRSSTPEAALLDAIGKPKARIKRTLVRSPDGRYTPQDDSGELSGAT
DLYNAVLQALPDAERNALGLHIGQGPALRLALRTHALKRAPLRTLITAEPTRAPTDTRTH
LRLLGLDNYPAAPAEQHDLQALARELYPAHTDEQIGEMIQTLERRPGGAFATLTALRQEF
QHLNRALADWAARPPHSYPGTEVSMGRQEYSDMRQNRVLFWRELLSAWRRETETDAYFEH
PSQNGQTLKSHAILYGELPALPANFEHISFLELSGNQTALTNIDVFLRSFPNIRHLSITH
AQLGQLPATLSAMPRLNTLILSNCAITLTPDSLNTLTAMNRLRTLDLYSNPLGLSPSVER
MIDLRALDLSETGISNLPAGLLSRASLELAVLSRNRITQLPSALFELPADTSATFDLSGN
PLSRATLEQVKSYYQRTGRYWEVDALAIDIQRVNTLFPDFSVNEVNRFLFGLPGTIEIGQ
IELARLEVEYADLSDGLDTWARQAPAPEEQARRVEFKEELQACWRREGALDTSGPQAIST
FTVESPQPVTGTFPSLDSGVFRHVSSLHLKGAQGPFPLQSPLFFRGFPTLNHLFIEGYVM
GDIPASVWDLPQLSSLRLPRCALTLSTESTASLTTLSELATLDLSHNTALGQLPDFSALP
RLTSIELEDTGLTAIPDGLLKAVERQRVNLSNNLITQIPDSAFRLPDSVTAVFDLSRNPL
NRSGLMQIKRHCQRTGEHWRVDAPTTSRERIKALYPTFTEHEASRFFFELPGDLDAAEPA
IEQLETEYAQLRTDLEEWVVNVPERHPVVDTPLDEQTRAQDQLNRRAFKTLLEAAWRRES
ELDDNNDDVRPTHKLTFEMPILGELPELSARFDHVTTLDLEGNGTTTRIDGLLKCFPKLR
SLVITRFSLGEIPLTALSLPALNALSLTESAIRLTPTSVHALSWMSGLEYLDLGGNRLGL
TPDVSQLTELETLYLPDTDITHLPQGLFALHELRSLDLSDNLIEEIPADFLQLATQLDTD
SDISGNPLSASSLDTLRHYYLLTGDDLAVAAAGLDENGSPLVRPRSPEPMEE