Protein Info for GFF4231 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: outer membrane fimbrial usher protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 853 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF13954: PapC_N" amino acids 30 to 169 (140 residues), 118.7 bits, see alignment E=3.1e-38 PF00577: Usher" amino acids 189 to 763 (575 residues), 488.2 bits, see alignment E=5.9e-150 PF13953: PapC_C" amino acids 772 to 835 (64 residues), 77.6 bits, see alignment 7.9e-26

Best Hits

KEGG orthology group: K07347, outer membrane usher protein (inferred from 100% identity to sea:SeAg_B0371)

Predicted SEED Role

"outer membrane fimbrial usher protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (853 amino acids)

>GFF4231 outer membrane fimbrial usher protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MSPTINLNRKSLALLIAIVCSGSAQGEEYYFDPALLQGATYGQNIARFNERQTPSGDYLA
DVYVNGTLVTSSTNIRFNAVKEGQQTEPCLPLSVMKAAQIKSLPATDAATECRPLREWVP
HAGWQFDSATLRLLLTIPMTELTHKPRGYISPSEWDSGALALFLRHNTNWTHTENTDSHY
RYQYLWSGLNMGVNLGLWQVRHQSNLRYANSNQSGSAWRYNSVRTWVQRPVASVNSILSL
GDSYTDSSLFGSLSFNGAKLVTDERMRPQGKRGYAPEVRGVAASSAHVVVKQLGKVIYET
NVPPGPFYIDDLYNTRYQGDLEVEVIEASGKTSRFTVPYSSVPDSVRPGNWHYSLAFGRV
RQYYDIENRFFEGTFQHGVNNTITLNLGSRIAQRYQAWLAGGVWATGMGAFGLNATWSNA
RAEHNDRQQGWRAELSYSKTFTTGTNLVLAAYRYSTNGFRDLQDVLGVRREAKTGIDYYS
DTLHQRNRLSATVSQPLGRLGTLNLSASTADYYNNQSRITQLQMGYSNQWRNISYGVNIA
RQRTTWDYDRFYHGVNEPLDVSSRQKYTETTMSFNVSIPLDWGENRTSVAMNYNQSSQSR
SSTVSMTGSSGENSDLSWSVYGGYERYRNSNSDSSAPTTFGGNLQQNTRFGALRANYDQG
DNYRQEGLGASGTLVLHPGGLTAGPYTSDTFALIHADGAQGAIVQNGQGAVVDRFGYAIL
PSLSPYRVNNVTLDTRKMRSDAELTGGSQQIVPYAGAIARVNFATISGKAVLISVKMPDG
GIPPMGADVFNGEGTNIGMVGQSGQIYARIAHPSGSLLVRWGTGANQRCRVAYQLDLHTK
EPFLYLNKICEKE