Protein Info for GFF4220 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Glycerol dehydratase reactivation factor large subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 125 PF08841: DDR" amino acids 1 to 120 (120 residues), 193.5 bits, see alignment E=2.6e-61

Best Hits

Predicted SEED Role

"Glycerol dehydratase reactivation factor large subunit" in subsystem Glycerol fermenation to 1,3-propanediol

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (125 amino acids)

>GFF4220 Glycerol dehydratase reactivation factor large subunit (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
VEFFREPLSPSVFAKVVYLKEGELIPVDNQTSLEKIRLVRRQAKEKVFVTNCLRALRQVS
PGGSIRDITFVVLVGGSSLDFEIPQMITDALAQYGVVAGQGNICGTEGPRNAVATGLVLA
GEAKK