Protein Info for GFF421 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 927 PF00196: GerE" amino acids 862 to 912 (51 residues), 44.5 bits, see alignment 4.8e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (927 amino acids)

>GFF421 hypothetical protein (Variovorax sp. SCN45)
MQQPDLSPGATALRTRSRRLLVRQGLLDRLAAPGARRCVVLRAPAGFGKSSLLLTWQREL
VSADTDIAWVRLADVPEGDLHFMTALMAALGGIDAAIPRQAVAHARPDAYAIERLVIALV
RGIAAQGRKVVLIVDDVHCAQSENVLHALQLLVEYAPPNLLCVFASQDDLPMTLAHAPAS
KAVLELRNDDLRFSLPESIDYLCMRLPDLDERAASAIHRLTEGWPALLRLASADVRRRRG
VQSSPLVHGVPDPEPFAAYFHDHVFSRLSETQLRLLTCCAASTRFNAPLCADLAGAGFTP
ALCAELLEPLAREGLLSAVPEAHEPPEPLDAPDAAPPRERWWYMHPLLRSVLLTRFAARP
EAERLRVHATACQSFAVRGMHHQAVRHALAAGNRETAARLAERGASALFTQGRMTEMIAL
VRQLDTQTIGDNANLALWMAWVELADYRLDDCARSIELLRAQAGDIAPAMRYRLTLLGCL
LAIRNDDNDALSRLLPELLAPPPGADDFALAGRRNVLTWLYLHRGEFEQARRIQRDEPTP
RVDGEPVVGTLFGSLVGRCLVGLSYAVEGQMHRAERIYRQVLSEAQERGARCAEAERLTA
QLLVEVLYEQQGPLAAARFIQEQLGTHDGLIPDTALRMIIVSNRAQQAAGRWREALEHLA
QAGSFLGRFGMDRALACVLLEQLRIQLASDDAEAARASLQELEVLHGRHPGVEPGTLRRI
ADIVERARICMAMHDGDLLPTLAKIETLSHRYGQRGQVGFVAALQLQAAEVERRLGRAEA
SRARVCAALRLGHRLGLLSTLLGAHDNALALIRTVATIPNLDPVLSFFIERIEALAQLQS
DARAEPPPVPRFRDDRRLSRLLTLREAEIAELLLQSLPNKKIALTLGLSLDTVKWHLKNI
YMKLDAHGRGAVAERMRLELERDDGDK