Protein Info for GFF4191 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 571 transmembrane" amino acids 24 to 46 (23 residues), see Phobius details amino acids 51 to 73 (23 residues), see Phobius details amino acids 104 to 128 (25 residues), see Phobius details amino acids 184 to 206 (23 residues), see Phobius details amino acids 219 to 238 (20 residues), see Phobius details amino acids 267 to 285 (19 residues), see Phobius details amino acids 305 to 324 (20 residues), see Phobius details amino acids 337 to 349 (13 residues), see Phobius details amino acids 360 to 380 (21 residues), see Phobius details amino acids 416 to 449 (34 residues), see Phobius details amino acids 470 to 493 (24 residues), see Phobius details amino acids 499 to 519 (21 residues), see Phobius details amino acids 549 to 569 (21 residues), see Phobius details PF13520: AA_permease_2" amino acids 21 to 507 (487 residues), 249.7 bits, see alignment E=5.7e-78 PF00324: AA_permease" amino acids 31 to 489 (459 residues), 29 bits, see alignment E=4.8e-11

Best Hits

KEGG orthology group: None (inferred from 94% identity to xau:Xaut_0922)

Predicted SEED Role

"amino acid transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (571 amino acids)

>GFF4191 hypothetical protein (Xanthobacter sp. DMC5)
VTTITNIHATTEGDGKLHRSISWTGAFWVASGVPALVLFSIGGIAGTTGTLSFLIWAISI
GMGFIQSFIYAEIAGLFPNKSGGASIYGAAAWVRYVKLVAPLSVWCNWFAWSPVLSLGCT
IAAAYILNAFAPIPAVNGPEVAQWIAAHATTLTGTDAEKAAAAVAALTPAVRDWTLFSHA
IGPVSFSLNASFFVGATLMLVVFAIQHRGIMGTASVQKWIGLSVIIPMVIVGLVPILTGK
VDWGNFSPLVPLAAAGAADPGSWNIPGWTLVLGGLFIAAWSTYGFETAVCYTSEFRNPEK
DTFKAIFYSGLLCLALFILVPFTFQGALGLSGMLDPAIVDGSGVAQALAHMVGGGKIIES
ALVMLMILALMLSIMTAMAGSSRTLYQGAVDGWLPRFLDHVNEHGAPTRAMWADLWFNLA
LLAVACADATSFFFVLAVANVGYIIFNFLNLNSGWIHRIDSGHVARPYKAPTFLLVLGTV
FAFANAVFMGAGAKVWNPVALWAGLITAALIIPVFIFRHYVQDGGKFPHETFEDLQVGDG
TKTQKRAGILPYLALIAGIAVVILSNLFFHL