Protein Info for GFF4176 in Pseudomonas sp. DMC3

Annotation: 33 kDa chaperonin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 PF01430: HSP33" amino acids 8 to 279 (272 residues), 248.3 bits, see alignment E=5.3e-78

Best Hits

Swiss-Prot: 92% identical to HSLO_PSEPF: 33 kDa chaperonin (hslO) from Pseudomonas fluorescens (strain Pf0-1)

KEGG orthology group: K04083, molecular chaperone Hsp33 (inferred from 92% identity to pfo:Pfl01_0267)

Predicted SEED Role

"33 kDa chaperonin (Heat shock protein 33) (HSP33)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (300 amino acids)

>GFF4176 33 kDa chaperonin (Pseudomonas sp. DMC3)
MTDLADTDFTQRFIFDDSDTRGELVALERSYAEVLAKHPYPEPVAQLLGELMAAASLLVG
TLKFDGLLILQARSEGPIPLLMIECSSEREIRGLARYNAEQIAADATLSDLMPDGVLALT
VDPTVGQRYQGIVDLDGETLSDCFTNYFVMSQQVGTRFKLFADGRRARGMLLQQLPADRL
KDEEDRAASWQHLTALASTLSADELLSLDNETVLHRLYHEEQVRLFDVQHLRFSCSCSRE
RSGNALVSLGLEDALALAAEQGGKVEIDCQFCNQQYLFDAADIAQLFAGAGVDTPSDTRH