Protein Info for GFF4136 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 976 signal peptide" amino acids 1 to 45 (45 residues), see Phobius details PF18883: AC_1" amino acids 433 to 554 (122 residues), 41.2 bits, see alignment E=1.5e-14 TIGR01414: outer membrane autotransporter barrel domain" amino acids 449 to 970 (522 residues), 146.1 bits, see alignment E=8e-47 PF03797: Autotransporter" amino acids 699 to 946 (248 residues), 122.3 bits, see alignment E=3.1e-39

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (976 amino acids)

>GFF4136 hypothetical protein (Variovorax sp. SCN45)
MARSFGNATSTRAHFSYNGRGHKRKSLAAAAAILTSASGVGAIAQVVIDQNRTGTVMLDS
EPPANSSTATIGANVTVDGAGGEALVGQNQRWSVNNAGTLNSLGAGVFAVRLQNGGDFSN
AFGATVSGTGGGITMINAPGMGINRGQILASDGAGIELRAGGGVSNYAGAQIRGGTAGVY
LINSTDALRNEGIIAATNGAGVHIEGGAVKLRNESGASIDGTSFGVQMVNGSQEVLNTGR
IGASAGVGVDLNAGGTVVNGPGAQIAGSTGGVHTVNGSASVITNGLISGGDYSVQFGTGN
GLLQMDTGAELRGDALGGDTSRILLLGNGYAANNFLRFGQLTVTDERWTLVGRTEARITD
VQSGQLLIGDPAFTGTAPVLVGDSVNVAAGAVLAGYASRIDGSVDNKGTLYVGNAYPYAG
VVAPSQLDIGGALSNVTGTVVLTRGEPFGNTLNVAGSYAGGGALRLGARLDEATQGPLAN
QVTDRMLVRGAAAGRTVVDVTAASTPGANGIITAAEGGPDAGVSIVQVAGASSEQAFALS
RPYVTGGTPYQYKLFAYGPGASNGAASAAQNLVGFPGSYWDYRLQRGYETAVPLPPGIVV
AVPPPPPPPPPPPPPPPPGPPGPPSPPPEPPPPPSPPPPVGPPVGGGGRYELAPQVPGYL
VLPGAVFNAGWQDMDSLHRRLGEIRDSQRAGIGENSEAFARAYGGSSRYRSDLAFSNYGY
GAKQDYAALQVGASAVIARDNGGATWRLGGALNVGRSRVVPDARDISRTDIDMQTLSGIA
TWLHPSGAYIDGLVSIGRVSADVRTDIYQGQTVASPHGRRHAVSIEGGWPIALGDSGMQI
EPQVQYAWQRLRLRSFTDIDGVRYDAHAESQGVLRVGARLTRPFQTAEGTRVTPYLRLDY
LHGTGGNGSARVGGVNFATGQFGSGWRVGAGVSGMLTRQLSVYADLSWQDRANGGGWRSW
MFSGGLRYAFGGSNER