Protein Info for GFF412 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 38 to 56 (19 residues), see Phobius details amino acids 68 to 88 (21 residues), see Phobius details amino acids 100 to 120 (21 residues), see Phobius details amino acids 129 to 150 (22 residues), see Phobius details amino acids 170 to 191 (22 residues), see Phobius details amino acids 197 to 216 (20 residues), see Phobius details amino acids 227 to 251 (25 residues), see Phobius details amino acids 257 to 278 (22 residues), see Phobius details amino acids 285 to 309 (25 residues), see Phobius details PF03547: Mem_trans" amino acids 9 to 149 (141 residues), 65.3 bits, see alignment E=1.9e-22 amino acids 166 to 307 (142 residues), 66.6 bits, see alignment E=7.8e-23

Best Hits

KEGG orthology group: K07088, (no description) (inferred from 82% identity to xau:Xaut_3839)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (313 amino acids)

>GFF412 hypothetical protein (Xanthobacter sp. DMC5)
MLNTFADISVIVLPVFGMVLVGYISARIGLVSERATDGLAEFVFSLSVPVLIFKTLTESK
LPEAQPWGYWIAYFAGAFFVFAIAMVAAERLFGRGRQEAVIHGFAAGQANTVFVGVPLIL
KAYGEAGAVPLFLLIAIHLPVMLVAATVLLEGSHGFSRATMMRLGKALAFNPILLGIYAG
ALAKVVGIQAVGVPKQMIDLLSAAATPCALISLGLSLKRYGMAGGDLLPSALISFLKLIV
HPAAVFALTMVFSMPPVWAGVAVLFAAMPSGVNGYLLAQRYGVGVAASTSAVSLSTGLAV
VTVAFWLYILGVG