Protein Info for GFF4088 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Flagellar biosynthesis protein FlhB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 transmembrane" amino acids 33 to 54 (22 residues), see Phobius details amino acids 94 to 121 (28 residues), see Phobius details amino acids 142 to 162 (21 residues), see Phobius details amino acids 182 to 208 (27 residues), see Phobius details PF01312: Bac_export_2" amino acids 7 to 346 (340 residues), 362.4 bits, see alignment E=1.3e-112

Best Hits

KEGG orthology group: K02401, flagellar biosynthetic protein FlhB (inferred from 56% identity to bcm:Bcenmc03_4645)

Predicted SEED Role

"Flagellar biosynthesis protein FlhB" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (374 amino acids)

>GFF4088 Flagellar biosynthesis protein FlhB (Hydrogenophaga sp. GW460-11-11-14-LB1)
MAEQDTGEKTEDASAQKLRKAREKGQVARSKDVATAVGLVCSLQLIVILAPSYLEDFRHL
FGLGFVVLDGEAALDNLWSNAFKPAILLVGKMVLPLALIPIIVIAFTLFPGGWVLSTDLF
MPKLERLNPLSYFSRLTKPKHLIDWATTAAKAICLGAVLWHTASSTRPAFLRLQGLPLNE
ALAQAMGLAITGIFTLCTVFVVFALIDLPLQRFVFLREQRMSKRDLKEEHKTSEGRPEVR
QRIRQLQQQIAKRSVRKIVPTADVVIVNPTHYAVALKYDTQKAEAPYVIAKGVDELALYI
RALATEHQVEVLELPPLARAIYNTSQVKQQIPAALYQAVALVLRYVLQLRAYREGGRKAQ
PALPADLHVPAHLT