Protein Info for GFF4076 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Flagellar basal-body rod protein FlgF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 242 PF00460: Flg_bb_rod" amino acids 5 to 35 (31 residues), 37.5 bits, see alignment 1.9e-13 TIGR03506: flagellar hook-basal body protein" amino acids 5 to 120 (116 residues), 102.8 bits, see alignment E=1.6e-33 PF06429: Flg_bbr_C" amino acids 169 to 239 (71 residues), 63.4 bits, see alignment E=1.7e-21

Best Hits

KEGG orthology group: K02391, flagellar basal-body rod protein FlgF (inferred from 58% identity to cvi:CV_1705)

Predicted SEED Role

"Flagellar basal-body rod protein FlgF" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (242 amino acids)

>GFF4076 Flagellar basal-body rod protein FlgF (Hydrogenophaga sp. GW460-11-11-14-LB1)
MDALIYTAMSGAERTLREQQVRANNLANADTPGFRADVAFSTAMATPGYGYDDRHMSQLN
ADGVSARHGVLKSTGRDLDVAITGEGYYAVQYRGAQEAYTRSGQFTVDADGTLTVNGRPV
VGDGGPIVLPAFTRVDIAGDGTVSIQPPGQEDLQPVDRIKTVRPLGGEVTKNEAGLIVAR
DGQPLPADDTVTMRSGHLEGSNVSAVEEMVATMTLSRDFEVQMKLFGSAERLSEAGNRLV
RG