Protein Info for GFF4075 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Flagellar hook protein FlgE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 397 TIGR03506: flagellar hook-basal body protein" amino acids 1 to 379 (379 residues), 285.5 bits, see alignment E=4.5e-89 PF00460: Flg_bb_rod" amino acids 3 to 33 (31 residues), 23.7 bits, see alignment (E = 5.5e-09) PF07559: FlaE" amino acids 170 to 278 (109 residues), 60.8 bits, see alignment E=3.2e-20 PF06429: Flg_bbr_C" amino acids 332 to 395 (64 residues), 62.6 bits, see alignment E=4.6e-21

Best Hits

KEGG orthology group: K02390, flagellar hook protein FlgE (inferred from 55% identity to bte:BTH_II0187)

Predicted SEED Role

"Flagellar hook protein FlgE" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (397 amino acids)

>GFF4075 Flagellar hook protein FlgE (Hydrogenophaga sp. GW460-11-11-14-LB1)
MSFNIALGGVNAINTQLEAISNNIANAGTYGFKSSRANFASMYADGQPIGVEVGSMSQTI
GTSGGALNTGRSMDAAIQGKGFFVTKDTNGETLFTRVGIFGADKDGYVTDSFGRRVQGYA
AIPGSTALGALGDMQIEKGQLPAQASSTLDYVGNLSADWPNPAVAPFSAADPQSYNGSMV
SVVYDSQGTKHTVTQYFVRTNPNEITVHYTFDGAALPAGSQTVLQFSTAGQLLTPAAPVT
KNLPVPATVAPIALAVNYNGTTQFAGQATTTVNASNGYASGSFVGVALDKDGSVLAQYSN
GLKQRVGTIALANFPNEDGLVPVSDTSWAVSNASGDPLYDVPGAGQAGTISPGSLEQSNV
DLTGELVGLMTAQRNYQANTKVFSTQQAMTQALMQAV