Protein Info for GFF4067 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 243 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details transmembrane" amino acids 45 to 66 (22 residues), see Phobius details amino acids 75 to 96 (22 residues), see Phobius details amino acids 102 to 119 (18 residues), see Phobius details amino acids 131 to 152 (22 residues), see Phobius details amino acids 171 to 191 (21 residues), see Phobius details amino acids 197 to 219 (23 residues), see Phobius details amino acids 225 to 242 (18 residues), see Phobius details PF01925: TauE" amino acids 14 to 241 (228 residues), 71.1 bits, see alignment E=5.9e-24

Best Hits

KEGG orthology group: K07090, (no description) (inferred from 39% identity to avn:Avin_22430)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (243 amino acids)

>GFF4067 hypothetical protein (Xanthobacter sp. DMC5)
MLGIPLATLSVLWAGAFLGAVAAGGAGFAFALAASAIWLHALDPIQTTALIVACGSILHL
TLVWPIRRSIDGVRLAPFLVGALVGVPLGVLVLTAVNPAPLKFVLGLGMAAYALYALLAP
RLPVIVAGGRWANAGIGFVGGILGGLGGYSGVVPTIWTQLRGWPKEVARGVYQPFILFAH
VVTLAAVGVVGIDGRSWLLIVLALPPLAIGAVLGLQIYGRLNEKAFKQMLSLMILLSGLA
LVF