Protein Info for GFF4063 in Pseudomonas sp. DMC3

Annotation: Protein Ves

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 190 PF05962: HutD" amino acids 11 to 183 (173 residues), 188.8 bits, see alignment E=5.2e-60

Best Hits

Swiss-Prot: 70% identical to YHUT_PSEPU: Uncharacterized 21.2 kDa protein in hutC 3'region from Pseudomonas putida

KEGG orthology group: K09975, hypothetical protein (inferred from 89% identity to pfo:Pfl01_0359)

Predicted SEED Role

"Conserved hypothetical protein (perhaps related to histidine degradation)" in subsystem Histidine Degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (190 amino acids)

>GFF4063 Protein Ves (Pseudomonas sp. DMC3)
MNYQVKVLRAEGYPRMPWKNGGGSTEEITRDAGAGLDGFGWRLSIADITESGGFSTFAGY
QRVITVLQGDGMTLCVDGDDTRPLLPLDPFAFSGESQVSCTLLGGAIRDFNLIYAPQRYS
ARLQWLDGEQRFFSSASTLLVFSVSELMDVRVGDGVSQLGRHDCLQLDGNSGLVEVSTHG
ACCVVELLQN