Protein Info for GFF4050 in Xanthobacter sp. DMC5

Annotation: p-hydroxybenzoic acid efflux pump subunit AaeB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 674 transmembrane" amino acids 31 to 51 (21 residues), see Phobius details amino acids 57 to 73 (17 residues), see Phobius details amino acids 80 to 99 (20 residues), see Phobius details amino acids 105 to 124 (20 residues), see Phobius details amino acids 130 to 148 (19 residues), see Phobius details amino acids 154 to 177 (24 residues), see Phobius details amino acids 365 to 387 (23 residues), see Phobius details amino acids 393 to 410 (18 residues), see Phobius details amino acids 417 to 439 (23 residues), see Phobius details amino acids 445 to 464 (20 residues), see Phobius details amino acids 472 to 491 (20 residues), see Phobius details amino acids 497 to 521 (25 residues), see Phobius details PF04632: FUSC" amino acids 31 to 639 (609 residues), 382.9 bits, see alignment E=3.7e-118 PF13515: FUSC_2" amino acids 43 to 174 (132 residues), 59.2 bits, see alignment E=4.6e-20

Best Hits

Predicted SEED Role

"FIG01005877: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (674 amino acids)

>GFF4050 p-hydroxybenzoic acid efflux pump subunit AaeB (Xanthobacter sp. DMC5)
MSSTAQGTLDSRPETNSGALRARLRSWAPRAVFGVRLAASVCLALYITYALELQNSFWAA
TTAAIVCQPNLGTSLQKGRWRIIGTVAGALAMVTVLGLFAQSRYTLAFCLAAWCGLCGLA
VVVLRNFASYAAALAGFTAAVIFADTIADPTSAFFFSIVRVSEICIGIGSTLFVILLTDF
GAARRTFASLLEDMTRQLVRGFRSTLAAREERFSPRDVLRKLSLFQAAADAAMADSPYLR
SRSGHLREAGTSLMDAVLGWQKIALEQELSGQRGDTVRACLDTLLSRLDPADLGRDPERL
RSACAEALQTLEALPHDDAGASILADATRDLLLCLRETAGNIALLMGARAERRAEPWTIV
VGDPLLPLLSGFRVFSAVAAAAAFTIATEWPNGPLAIAFVAIAALIFAPAGDQARVLVTD
FTIGSILVTVIGCGLYFGVMPSISTFPQLAVVLALVLVPIGLMQAGSWHTPLFLAMSINL
LPLLGVGNPISYDASTFFNIALTIILGNIIGTLFFIIIPGLSPDVRTRRLLALSVRDLRR
LAARSQARDAARWTAVMTRRVEDLPPQATDAQASSLMTLFILGRALILLREASADEVERR
RISDASAALAEGRVALARIAFGDMERVLSERAAAQPSEAPAGLPALVEIKIITDALDACS
DLLKGTDGQRTNLG