Protein Info for GFF404 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: D-glucarate permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 436 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 53 to 72 (20 residues), see Phobius details amino acids 79 to 99 (21 residues), see Phobius details amino acids 105 to 124 (20 residues), see Phobius details amino acids 145 to 166 (22 residues), see Phobius details amino acids 172 to 190 (19 residues), see Phobius details amino acids 242 to 262 (21 residues), see Phobius details amino acids 279 to 303 (25 residues), see Phobius details amino acids 315 to 332 (18 residues), see Phobius details amino acids 338 to 360 (23 residues), see Phobius details amino acids 369 to 396 (28 residues), see Phobius details amino acids 403 to 423 (21 residues), see Phobius details PF07690: MFS_1" amino acids 18 to 304 (287 residues), 172.8 bits, see alignment E=1e-54 TIGR00893: D-galactonate transporter" amino acids 20 to 423 (404 residues), 418 bits, see alignment E=1.9e-129

Best Hits

Swiss-Prot: 52% identical to GUDP_BACSU: Probable glucarate transporter (gudP) from Bacillus subtilis (strain 168)

KEGG orthology group: K03535, MFS transporter, ACS family, glucarate transporter (inferred from 100% identity to seg:SG3733)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (436 amino acids)

>GFF404 D-glucarate permease (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MNTIIKRTKVRHTILIFLFLATVFNYADRATLSVVAPIMSKELGFDPEAMGLAFSSFGIA
YVIMQLPGGWLLDRYGSRLVYGCALIGWSLVTMFQGTIYLYGSPLIVLVILRLLMGAIEA
PAFPANSRLSVQWFPNNERGFVTSVYQAAQYISLGIITPLMTIILHNLSWHFVFYYIGAI
GVMLGIFWLMKVKDPMHHPKVNQAEIDYIRSGGGEPSLGCKKEPQKITFAQIKTVCVNRM
MIGVYIGQFCVTSITWFFLTWFPTYLYQAKGMSILKVGFVASIPAIAGFIGGLLGGVFSD
WLLKRGYSLTVARKLPVICGMLLSCVIVIANYTSSEFVVIAAMSLAFFAKGFGNLGWCVL
SDTSPKEVLGIAGGVFNMCGNMASIVTPLVIGVILANTQSFDFAILYVGSMGLIGLISYL
FIVGPLDRITLTSSAA