Protein Info for PS417_20685 in Pseudomonas simiae WCS417

Annotation: CAAX protease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 263 transmembrane" amino acids 12 to 39 (28 residues), see Phobius details amino acids 51 to 71 (21 residues), see Phobius details amino acids 101 to 116 (16 residues), see Phobius details amino acids 125 to 151 (27 residues), see Phobius details amino acids 158 to 177 (20 residues), see Phobius details amino acids 198 to 219 (22 residues), see Phobius details amino acids 233 to 258 (26 residues), see Phobius details PF02517: Rce1-like" amino acids 157 to 251 (95 residues), 61.7 bits, see alignment E=3.4e-21

Best Hits

KEGG orthology group: K07052, (no description) (inferred from 97% identity to pfs:PFLU4550)

Predicted SEED Role

"CAAX amino terminal protease family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U7B7 at UniProt or InterPro

Protein Sequence (263 amino acids)

>PS417_20685 CAAX protease (Pseudomonas simiae WCS417)
MIALPWLYLALLSIGYLLALIYGQLGALAGVSIALLLIAGYAVRQQRTPWARYLGHGLFI
VLALGLAMHWLPGFYNGRGIAPQRLTDDAVPFSMYLNQDKPLIGFWLLLACPWIVARRSL
RLSICVAALALTLTAIAALGGAALLGMITWAPKWPEQAWLWVLNNLLLVTLVEEALFRGY
VQGGLSRRFKHLPYGENLALLLASLLFGLVHFGAGWHWVLLASIAGVGYGLAYRFGGLGA
AIATHFGLNLLHFGLFTYPMLAS