Protein Info for GFF4025 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Transcriptional regulator, AraC family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 PF12852: Cupin_6" amino acids 2 to 197 (196 residues), 156.1 bits, see alignment E=1.3e-49 PF00165: HTH_AraC" amino acids 223 to 263 (41 residues), 32.6 bits, see alignment 9.9e-12 PF12833: HTH_18" amino acids 236 to 315 (80 residues), 77.4 bits, see alignment E=1.3e-25

Best Hits

KEGG orthology group: None (inferred from 47% identity to bpy:Bphyt_6076)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (326 amino acids)

>GFF4025 Transcriptional regulator, AraC family (Hydrogenophaga sp. GW460-11-11-14-LB1)
VDALSETLRVVQLVGAIFLQGRFTAPWCYQSPRADAAAPLLEPDAERVVIFHLVTEGECF
VELEHQPPVRLGAGDVIVFSQGDAHRMGSAPGLTPAPGTPLKELLQRRPRQLMYGGGGAS
TRLLCGYLACDARLARLLLAGLPPLVRVNVRGSNAGTWLEASVRYALAEARSPRPGGAGV
LSKLAEVLFIEVLRLYINEQSAGRTGWLAGLGDRVVGAALNALHQRPAHAWTLEELAREA
GTSRSVLAERFQHLVGSSPMQYLIQWRMMLAANLLCRSKAPLSRIAEDVGYQTDTAFIRA
FRREYGVPPATWRRRRAAQEELAAPT