Protein Info for GFF4024 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: FIG00640199: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 141 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF13987: YedD" amino acids 25 to 129 (105 residues), 195.4 bits, see alignment E=6.9e-63

Best Hits

Swiss-Prot: 100% identical to YEDD_SALTY: Uncharacterized lipoprotein YedD (yedD) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: None (inferred from 100% identity to stm:STM1964)

Predicted SEED Role

"FIG00640199: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (141 amino acids)

>GFF4024 FIG00640199: hypothetical protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MKKVAIVGALLVLAGCAEVENYNDVVKTPAPAGLEGYWQSKGPQRKLVSPEAIASLVVTK
EGDTLDCRQWQRVIALPGKLTMLSDDLTNVTVKRELYEIERDGNTLEYDGMTLQRVARPT
PECAAALEKTPLPTPLPTPLP