Protein Info for GFF4023 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Putative transport system permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 81 to 100 (20 residues), see Phobius details amino acids 112 to 138 (27 residues), see Phobius details amino acids 148 to 171 (24 residues), see Phobius details amino acids 197 to 216 (20 residues), see Phobius details amino acids 222 to 245 (24 residues), see Phobius details amino acids 258 to 278 (21 residues), see Phobius details amino acids 290 to 311 (22 residues), see Phobius details amino acids 322 to 341 (20 residues), see Phobius details amino acids 361 to 383 (23 residues), see Phobius details PF04143: Sulf_transp" amino acids 4 to 161 (158 residues), 85.6 bits, see alignment E=2.3e-28 amino acids 237 to 387 (151 residues), 87.9 bits, see alignment E=4.7e-29

Best Hits

Swiss-Prot: 100% identical to YEDE_SALTY: UPF0394 inner membrane protein YedE (yedE) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K07112, (no description) (inferred from 99% identity to sty:STY2173)

Predicted SEED Role

"Putative transport system permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (401 amino acids)

>GFF4023 Putative transport system permease protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MSWQHFKQTWLIKFWAPAPAVIAAGILSTYYFGITGTFWAVTGEFTRWGGQILQLFGVHA
EQWGYYKLIHLEGTPLTRIDGMMILGMFGGCFAAALWANNVKLRMPRSRIRIVQAVAGGI
IAGFGARLAMGCNLAAFFTGIPQFSLHAWFFALATAIGSWFGARFTLLPIFRIPVKMQKV
SAASPLTQKPDQARRRFRLGMLVFIGMIGWALLTAMHQPKLGLAMLFGVGFGLLIERAQI
CFTSAFRDLWISGRAHMAKAIIFGMAVSAIGIFSYVQLGVAPKIMWAGPNAVIGGLLFGF
GIVLAGGCETGWMYRAVEGQVHYWWVGLGNVIGSTILAYYWDDFAPALATSWDKVNLLNT
FGPLGGLLVTYLLLFTALMLIIGWEKRFFRRAGLTPAKESV