Protein Info for GFF4014 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: DUF1232 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 122 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 40 to 66 (27 residues), see Phobius details amino acids 88 to 109 (22 residues), see Phobius details PF06803: DUF1232" amino acids 16 to 51 (36 residues), 49.6 bits, see alignment E=1.3e-17

Best Hits

KEGG orthology group: None (inferred from 72% identity to dac:Daci_0463)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (122 amino acids)

>GFF4014 DUF1232 domain-containing protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
VTLWFAGKNRRTPWYAKALGLFVVAYALSPLDLIPDFIPVLGYVDDVLLLPALIWLAIRL
LPADVLEECRGEADRWMEANHAKPRSRLGTVLVVGVWIVLGAAVLVWLLRWRASVGAASS
LV