Protein Info for GFF3990 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 470 transmembrane" amino acids 23 to 48 (26 residues), see Phobius details PF00675: Peptidase_M16" amino acids 88 to 214 (127 residues), 25.4 bits, see alignment E=1.2e-09 PF05193: Peptidase_M16_C" amino acids 221 to 397 (177 residues), 115.5 bits, see alignment E=2.7e-37

Best Hits

Swiss-Prot: 44% identical to Y4WB_SINFN: Uncharacterized zinc protease-like protein y4wB (NGR_a01030) from Sinorhizobium fredii (strain NBRC 101917 / NGR234)

KEGG orthology group: None (inferred from 83% identity to xau:Xaut_2203)

Predicted SEED Role

"ZINC PROTEASE (EC 3.4.99.-)" (EC 3.4.99.-)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.4.99.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (470 amino acids)

>GFF3990 hypothetical protein (Xanthobacter sp. DMC5)
VTAVVPAFEVFRSPARSGRRAFFAGAGLRPAARLFFAMVTMALSLLAADTAQSQSSRITE
VTSPGGIKAWLVHDTTLPLIAFEFAFLGGAAQDGPEHAGLANLASSLLDEGAGPMDSDAF
QRALADHAVELHFDAGRDEMRGSLRTLSENRDKAFELLRLAVNEPRFDGEAVERIRASQL
AMLRRRSTEPNAIANDRWFALAFPGHPYGRPVDGTLDSVAKLTREDIAGFIGKTFAHSNL
RVAVVGDISAEELGKRLDEVFGKLPAQATLTPVANVTPQKIGTVEVIPLDVSQSVVVMGT
GGLERRDPDFIPAYVLNHILGGSAFSSRLFKEVREARGLAYSVYSYQVALSHVGLWFAGT
ATKNERAAESISLITHEFGQILKDGPTAKELEEAKSYLMGSYALRFDTSSKVAGQLLQIQ
LDELGIDYIDRRNALIAAVTLDDLKRVAGRLATAKDALTVVVGKPVGLGG