Protein Info for GFF3988 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1411 transmembrane" amino acids 442 to 462 (21 residues), see Phobius details PF08291: Peptidase_M15_3" amino acids 660 to 751 (92 residues), 41.1 bits, see alignment 8.4e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1411 amino acids)

>GFF3988 hypothetical protein (Sphingobium sp. HT1-2)
LADQSSIFPAFIRAEYDGSGSGFALFEKEAGESAARARRQFEANFAEVARVVNGAISRGL
KPNGAMDLGVDGFRQAAAQAKAYEQSLRTTREAAQNLATSTGDTSQATHSYITALNAQVT
EAARARQEAEAQVATYTRLQNEIDATAARNTSLAASYRELYAEQARSTNQQHFAQQGYNQ
LVAPGLTRSATNDGAGFAALEEQLTRQQALVRELDAGVAALEGRFAREAAEQARAAETAA
AAIVRQTAALEELRRAEAGAANGAALLNAIMRETGAGATTGNSASASASAFEQQFAEQAR
AAEQYAQALDKLQSELDPMYAAQQRFNQALDTADDLLKANIIDERLHAAAVQHARDQLQA
HSDAIHTQNDAFLKLSRGSGVLRQAYIQTGQQMQDIVISLYGGQKASIVFAQQLPQLAFA
LSGLGMQADGTQKGIGRIAALLSGPVWGVAFTGAAAAVGMLVGKLWEQDEASKAAEDAAK
KHKAAIDQLNEAMERSVQTAEDKARANFIELETERQATIETRKRTAALLEHAKARLALAD
SQGGDGSGEGGVNFGVTAGATQEAEIRRLEAALKKNQEELELLGKTTTIARGQYQMEILE
QLSTREGTATRKWANTINEAIIDGKSAAELDKLRAARDAELKAIRESEKALNSSGTARDK
EAATVSQVSKLLLSAIPGTVTSGARSAAENRRVGGAEGSYHVRGQAIDFVPKGGMGSVSK
EQIRAVFQAAGLTVKELLGPGDKGHNDHFHVAWEGGKDQVNSDRINEQLAREAERRAAEA
QRAAEELQRAAETLFGKFDEGRAAAIEYSNALAEIDRVMKAGLISSDDALAYGIAAGQQK
AANDNEREDRAMQQLRKDIYGDKDSPTEQFMKEQDEAWRRSVEASREIARQMDQGLQSVA
DLFGNKAARALAILTENVPTDSGLGALMSGIGAGNTNYFKEFSRDIGGVLEDVFGKDRLK
SIGEGIGEVMGAAGVGMTAGGLALGNSNSKLGSALGGAVGKEAGEALGKLAGGFLGKLGG
PLGSIAGGILGGAIGGMFTSAKWGTAAVTGNSDGDVSVGGNKSAYRSNAGLAGTSIQSGL
DAIAEQFGVDVGGYNVSIGQYKGKWRVSTTGRTGKLKGGSGRTDIKDFGEDGAEDAIKYA
IADAVKDGALEGLRASTQALLAASDDVEAQLQKALDFEDVFSRLKSYKDPVGAALDTLDK
EFKRLQGIFEEAGASAEEYAQLEELYGIERANAVKEAAEKVTASLKSLFDDLTVGNDARS
LRDRLAEAQAAYDPLAKRVAAGDTTAYDDYADAAAQLLDLQRQIYGSGDEYFKMLDQITA
LTKSRIDAETSLAEASANRDSLFASDSSLAPVVSATETQTAQIVSALNDNNVSMLTAMQV
QTDNIIALTRTIAAQGNSNAASGLSVARNNY