Protein Info for GFF398 in Pseudomonas sp. DMC3

Annotation: NADP/NAD-dependent aldehyde dehydrogenase PuuC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF00171: Aldedh
  • amino acids 31 to 492 (462 residues), 564.5 bits, E=8.1e-174

Best Hits

Swiss-Prot: 43% identical to AL1A2_MOUSE: Retinal dehydrogenase 2 (Aldh1a2) from Mus musculus

KEGG orthology group: K12254, 4-guanidinobutyraldehyde dehydrogenase / NAD-dependent aldehyde dehydrogenase [EC: 1.2.1.- 1.2.1.54] (inferred from 98% identity to pfo:Pfl01_5534)

MetaCyc: 88% identical to 4-guanidinobutyraldehyde dehydrogenase (Pseudomonas putida)
Gamma-guanidinobutyraldehyde dehydrogenase. [EC: 1.2.1.54]

Predicted SEED Role

"Aldehyde dehydrogenase (EC 1.2.1.3)" in subsystem Entner-Doudoroff Pathway or Glycerolipid and Glycerophospholipid Metabolism in Bacteria or Methylglyoxal Metabolism or Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate (EC 1.2.1.3)

MetaCyc Pathways

• superpathway of NAD/NADP - NADH/NADPH interconversion (yeast) (7/8 steps found)
• superpathway of glycol metabolism and degradation (6/7 steps found)
• ethanol degradation II (3/3 steps found)
• ethanol degradation IV (3/3 steps found)
• superpathway of L-arginine and L-ornithine degradation (10/13 steps found)
• putrescine degradation V (2/2 steps found)
• mitochondrial NADPH production (yeast) (4/5 steps found)
• octane oxidation (4/5 steps found)
• superpathway of ornithine degradation (6/8 steps found)
• L-arginine degradation IX (arginine:pyruvate transaminase pathway) (3/4 steps found)
• phytol degradation (3/4 steps found)
• putrescine degradation III (3/4 steps found)
• superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation (8/11 steps found)
• ethanol degradation III (2/3 steps found)
• hypotaurine degradation (2/3 steps found)
• putrescine degradation IV (2/3 steps found)
• ethylene glycol degradation (1/2 steps found)
• putrescine degradation I (1/2 steps found)
• Entner-Doudoroff pathway II (non-phosphorylative) (6/9 steps found)
• L-arginine degradation VIII (arginine oxidase pathway) (2/4 steps found)
• L-tryptophan degradation X (mammalian, via tryptamine) (2/4 steps found)
• fatty acid α-oxidation I (plants) (2/4 steps found)
• serotonin degradation (4/7 steps found)
• histamine degradation (1/3 steps found)
• 3-methyl-branched fatty acid α-oxidation (3/6 steps found)
• noradrenaline and adrenaline degradation (8/13 steps found)
• dopamine degradation (2/5 steps found)
• D-arabinose degradation II (1/4 steps found)
• aromatic biogenic amine degradation (bacteria) (3/8 steps found)
• ceramide degradation by α-oxidation (2/7 steps found)
• sphingosine and sphingosine-1-phosphate metabolism (4/10 steps found)
• alkane oxidation (1/6 steps found)
• limonene degradation IV (anaerobic) (1/7 steps found)
• ceramide and sphingolipid recycling and degradation (yeast) (4/16 steps found)
• superpathway of pentose and pentitol degradation (12/42 steps found)

KEGG Metabolic Maps

• 1,2-Dichloroethane degradation
• 1- and 2-Methylnaphthalene degradation
• 3-Chloroacrylic acid degradation
• Arginine and proline metabolism
• Ascorbate and aldarate metabolism
• Butanoate metabolism
• Fatty acid metabolism
• Geraniol degradation
• Glycerolipid metabolism
• Glycolysis / Gluconeogenesis
• Histidine metabolism
• Limonene and pinene degradation
• Lysine biosynthesis
• Lysine degradation
• Naphthalene and anthracene degradation
• Propanoate metabolism
• Pyruvate metabolism
• Tryptophan metabolism
• Urea cycle and metabolism of amino groups
• Valine, leucine and isoleucine degradation
• beta-Alanine metabolism

Isozymes

Compare fitness of predicted isozymes for: 1.2.1.-, 1.2.1.3

Use Curated BLAST to search for 1.2.1.- or 1.2.1.3 or 1.2.1.54

Protein Sequence (497 amino acids)

>GFF398 NADP/NAD-dependent aldehyde dehydrogenase PuuC (Pseudomonas sp. DMC3)
MTTLTRADWEQRARDLKIEGRAFLNGEYTDAVSGETFECISPVDGRLLGKIASCDAADAD
RAVENARATFNSGVWSRLAPTKRKATMIRFASLLKQHAEELALLETLDMGKPISDSLYID
VPGAAQALSWSGEAIDKIYDEVAATPHDQLGLVTREPVGVVGAIVPWNFPLMMACWKLGP
ALSTGNSVILKPSEKSPLTAIRIAALAIEAGIPKGVLNVLPGYGHTVGKALGLHNDVDTL
VFTGSTKIAKQLMVYAGESNMKRVWLEAGGKSPNIVFADAPDLQAAAESAASAIAFNQGE
VCTAGSRLLVERSIKDKFLPMVIEALKAWKPGNPLDPATNVGALVDTQQMNTVLSYIESG
HSDGAKLVAGGKRILQETGGTYVEPTIFDGVSNAMKIAQEEIFGPVLSVIAFDSAEEAIQ
IANDTPYGLAAAVWTQDISKAHLTAKALRAGSVWVNQYDGGDMTAPFGGFKQSGNGRDKS
LHAFDKYTELKATWIKL