Protein Info for GFF3971 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: FIG01069516: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 508 transmembrane" amino acids 24 to 44 (21 residues), see Phobius details amino acids 67 to 92 (26 residues), see Phobius details amino acids 109 to 130 (22 residues), see Phobius details amino acids 143 to 163 (21 residues), see Phobius details amino acids 184 to 206 (23 residues), see Phobius details amino acids 219 to 240 (22 residues), see Phobius details amino acids 255 to 275 (21 residues), see Phobius details amino acids 287 to 308 (22 residues), see Phobius details amino acids 321 to 343 (23 residues), see Phobius details amino acids 375 to 401 (27 residues), see Phobius details amino acids 413 to 431 (19 residues), see Phobius details amino acids 443 to 476 (34 residues), see Phobius details amino acids 482 to 500 (19 residues), see Phobius details PF01554: MatE" amino acids 71 to 231 (161 residues), 120.1 bits, see alignment E=3.9e-39 amino acids 301 to 462 (162 residues), 74.5 bits, see alignment E=4.2e-25 TIGR00797: MATE efflux family protein" amino acids 71 to 475 (405 residues), 235.2 bits, see alignment E=6.3e-74

Best Hits

Swiss-Prot: 82% identical to YEEO_ECOLI: Probable FMN/FAD exporter YeeO (yeeO) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 99% identity to sei:SPC_1702)

MetaCyc: 82% identical to FMN/FAD exporter (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-272; TRANS-RXN0-595

Predicted SEED Role

"FIG01069516: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (508 amino acids)

>GFF3971 FIG01069516: hypothetical protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
LLHLQTFFLQKALQPYDFSLIIEMWFQLSSLRSILNVSTALRQAVVRTPWYAKRKSYKVL
FWREITPLAIPIFLENTCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDL
GTTVVVAFSLGKRDRRRARAAARQSLVIMTLFAVVLAVVIHYFGSEIINIVAGEATPEVK
GLALTYLELTVLSYPAAAIALIGSGALRGAGNTKIPLMINGGMNILNIIISSILIYGAFS
WQGLGFAGAGLGLTISRYIGAVAIIWVLMIGFNPALRIPLKSYLKPLNFGIIWEVMGIGI
PASIESVLFNGGKLLTQMFVAGMGTNVIAGNFIAFSVAALINLPGNALGSASTIITGKRL
GTGQIGQAERQLRHVFWMSTIVLTAIAWGTAPFAGLFASFYTQEQDVKEVVKVLLWLNAA
FMPIWAAAWVLPSGFKGARDVRFAMWVSMLGMWGCRVVAGYTLGIVLGMGVVGVWLGMFL
DWAVRGALFYWRLISGRWLWRYPRVKRE