Protein Info for GFF3967 in Pseudomonas sp. DMC3

Annotation: Transcription elongation factor GreB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 164 PF01272: GreA_GreB" amino acids 89 to 162 (74 residues), 80.6 bits, see alignment E=3.4e-27

Best Hits

KEGG orthology group: None (inferred from 89% identity to pfo:Pfl01_4873)

Predicted SEED Role

"Transcription elongation factor GreB-related protein" in subsystem Transcription factors bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (164 amino acids)

>GFF3967 Transcription elongation factor GreB (Pseudomonas sp. DMC3)
MSRAFVNEDNAAAQADQPVERQVSTQPNYVTPQGLAQLQAKVTELQSLHAEQTAKGEQAD
KQRLADLQRDLRYFTQRLSSAQVAVAATSTDKVQIGSWVTFADEHDTEHRVQLVGEDQAD
ASQGLINWASPLGRALLGARLNDEVLWQRPAGDQLIEVIRIEPA