Protein Info for GFF3941 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Propanediol dehydratase reactivation factor small subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 116 PF02288: Dehydratase_MU" amino acids 7 to 111 (105 residues), 116 bits, see alignment E=3.8e-38

Best Hits

KEGG orthology group: None (inferred from 97% identity to sea:SeAg_B2167)

Predicted SEED Role

"Propanediol dehydratase reactivation factor small subunit" in subsystem Propanediol utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (116 amino acids)

>GFF3941 Propanediol dehydratase reactivation factor small subunit (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MDSNHSAPAIVITVINDCASLWHEVLLGIEEEGIPFLLQHHPAGDIVDSAWQAARSSPLL
VGIACDRHSLVVHYKNLPASAPLFTLMHHQDSQAQRNTGNNAARLVKGIPFRDLHA