Protein Info for GFF3919 in Pseudomonas sp. DMC3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 224 transmembrane" amino acids 18 to 36 (19 residues), see Phobius details amino acids 49 to 73 (25 residues), see Phobius details amino acids 85 to 108 (24 residues), see Phobius details amino acids 114 to 133 (20 residues), see Phobius details amino acids 154 to 174 (21 residues), see Phobius details amino acids 190 to 211 (22 residues), see Phobius details PF06790: UPF0259" amino acids 63 to 212 (150 residues), 35.6 bits, see alignment E=4.5e-13

Best Hits

KEGG orthology group: None (inferred from 84% identity to pfo:Pfl01_4927)

Predicted SEED Role

"FIG00958173: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (224 amino acids)

>GFF3919 hypothetical protein (Pseudomonas sp. DMC3)
MNALEVLRDSLYFFKRHLGSIVQLCLPLVIVEAFLQQAVDHATGPDTFAGVSIIVGLLVY
PLYTAALILFLDARSRGESPRNRDLLAMAATLWPRFAVLTALNTLLILLGLSLYFLPGLM
LMVMLAFAEYLLVLRGLGPLQAMKESLRLTRGHFWRILLCILCVMTPLWLLKGATLAMYP
EPQNPLIAGLIDSAHSFLQLFTSVVLFRLFMLISELPDKRNGAV