Protein Info for GFF3893 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1679 transmembrane" amino acids 48 to 68 (21 residues), see Phobius details PF13018: ESPR" amino acids 1 to 38 (38 residues), 35.2 bits, see alignment (E = 2.8e-12) TIGR02601: autotransporter-associated beta strand repeat" amino acids 362 to 392 (31 residues), 40.1 bits, see alignment (E = 2.4e-14) amino acids 434 to 459 (26 residues), 28 bits, see alignment (E = 1.4e-10) amino acids 855 to 884 (30 residues), 38 bits, see alignment (E = 1.1e-13) amino acids 922 to 952 (31 residues), 33.6 bits, see alignment (E = 2.5e-12) amino acids 1062 to 1093 (32 residues), 36.5 bits, see alignment (E = 3.1e-13) amino acids 1153 to 1183 (31 residues), 43.8 bits, see alignment (E = 1.6e-15) PF12951: PATR" amino acids 364 to 391 (28 residues), 40.8 bits, see alignment (E = 3.6e-14) amino acids 433 to 459 (27 residues), 30.5 bits, see alignment (E = 5.8e-11) amino acids 520 to 549 (30 residues), 12.4 bits, see alignment (E = 2.7e-05) amino acids 856 to 884 (29 residues), 41.8 bits, see alignment (E = 1.7e-14) amino acids 923 to 951 (29 residues), 34.8 bits, see alignment (E = 2.8e-12) amino acids 1063 to 1092 (30 residues), 37.5 bits, see alignment (E = 4e-13) amino acids 1153 to 1181 (29 residues), 40.5 bits, see alignment (E = 4.6e-14) PF18886: DUF5649" amino acids 479 to 543 (65 residues), 31.4 bits, see alignment (E = 4e-11) amino acids 562 to 630 (69 residues), 44.4 bits, see alignment (E = 3.3e-15) PF18883: AC_1" amino acids 1214 to 1325 (112 residues), 85.1 bits, see alignment 7.2e-28 TIGR01414: outer membrane autotransporter barrel domain" amino acids 1226 to 1679 (454 residues), 205.1 bits, see alignment E=2.1e-64

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1679 amino acids)

>GFF3893 hypothetical protein (Variovorax sp. SCN45)
MNISFRSLWNDALGAWIAVSEISRSHSGSRSTSRLDSAAKPGEPARRLFRLSALMSVVAV
LGAAPFVSASAQSVVIGTTGSGGLGVGIGGDGGAGGIGGGGGGGSGGAPAGGGGGGYGAG
GGGAGFTYGSNSGGAGGPGKGGDGGSDTWGQGGAGSNGGASGTNGVQGADGPFGPKNGGN
ALAAIAEGSTFGGLTSATFSADRTVNGSLGIGGGGGGGAGASGTAAGGDGSSGGAGELTI
SAGTTTVTGAIVIGGSGGGGGGGSGNANGGRGGDGGNGQLTVSDGKLVADSIVIGGSSGG
KGSGGATSGLAGAGATGTLTVTGGSMNVAHGVTVNGNGQVDFKPDAGTQVTAGYAISGAG
SVSQTGAGTTVMTGDNTYTGGTTISAGTLQIGAGGTTGSIVGKVSNAGTLVFDRSNTLTF
NGTISGTGQVQQIGSGTLELTGANSYEGGTLIGGGTLKVAGDGALGAATGALTFNGGGTL
QSTGAFTSARDVTLAGAGSIVSKGALSMSGVFTGNGALDVQAGSGDITLTNAGNDFGGAV
SLSGATVQINDKNALTLGTLNTGALTATSHGNLQFQGGGSASSIDVRSNDGAVTQTGALS
VMGKLSVDAGTGSIALNNTSNSFQGPVSLAGQNISVASSGDLSVTTLANGIDGAVSLVAG
GALALPNAAIDTGTAALTLAANGAALGIAHELSGGNISITGRKGVTLQADVSTKGTLTLA
SDGSVMQTAGVVTAGTLTGSAGSVSMNQANQIGALGDFTAVGAFSLRNAQALQVTGNVAA
SSVALDVAQGVVVTGSISATGNKGEVISVASDTRLQVGNGGTTGVLAGNVSNDGTLAFNR
SDALTFAGAIGGKGALVQQGQGTLVLTGANSYTGGTTVKAGVLQGNATSLQGDIVNDATV
VFEQTKAGGGGTYAGTMSGTGSLRKIGDGELVLASVNSYSGGTSVEAGTLNASVTGALGS
GPVSVANGAAVLFSGKADMGAVTLSNGPDGLINFVGSVTAGQAAIVNGKGGTVRISELTA
NGTSIGSLGGAGQVVLGAKTLTTGGLNADTEISGVVSGTGGSLVKVGTGALTLSGANTYT
GGTTLRQGRLNVGHSQALGGGTLSMDDDTTLGFSADGLTIANTIHLTGQLDPIIDTGAFS
GTLSGAISGGGFITKEGTGTLTLSGANTYTGATNVAQGTLKAGAANTFSAASAHSVAAGA
TLDLAGFNQTLASLANSGTVSLAGAAAGTTLTVNGNYVGNNGVLKLGTALNGTGPSDRLV
INGGTASGKTSVQIANLGGLGALTTGNGIEVVTAQNGAKTTAQTTRDAFSLAGGHVDAGA
YEYRLYAADASGAGESWYLRSSINAVTPTNPAGVPVVTYRAEASLYAALPGQLRQGNLAM
LGDLRKRVGDDDVKGTAPSATGAERRAWARVLSTDIDIQQGGAVSPTSKGRLTGFQAGTD
LLATPNWRAGIYVGQLDGDARVNGFASGIQNLGVGRNDLRSQYVGVYGTYTSDSGFYADA
VVQSGRHRYTVEPLMGLGAAGKGNSLLGSIEVGQAFPIGSSGWTVEPQLQLIHQHMDLSN
SAIVGAIAQPQADSGWVARAGVRVKGQIDTGMGALQPYGRFNVYKTSSGADIARFVNGAT
TTDIAAPTGGTNTELAGGFTLGLNASTSLYGEVGKLWSSGGDAKVKSGISGSLGVRVKW