Protein Info for GFF3889 in Pseudomonas sp. DMC3

Annotation: Tn3 family transposase TnXax1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 440 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details TIGR02283: lytic murein transglycosylase" amino acids 68 to 364 (297 residues), 389.7 bits, see alignment E=4.3e-121 PF13406: SLT_2" amino acids 68 to 361 (294 residues), 382.3 bits, see alignment E=1.4e-118 PF01471: PG_binding_1" amino acids 382 to 437 (56 residues), 45.8 bits, see alignment 5.8e-16

Best Hits

KEGG orthology group: None (inferred from 94% identity to pfo:Pfl01_4961)

Predicted SEED Role

"Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-)" in subsystem Peptidoglycan Biosynthesis (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (440 amino acids)

>GFF3889 Tn3 family transposase TnXax1 (Pseudomonas sp. DMC3)
MPPSLSRRWPVRQLIAASSFILLVACAEKPTAADAQPLQAAPVTTAPAIIPPVVPSADPL
DIQPTQTFAEWQAGFRKDALAAGIRPELFDQAFANISFDASVIRADRSQPEFSRPVWEYL
DGALSPLRVRKGQALINQYADILQSIEQRYGVDRQALVSVWGMESNFGQFQGSKSVINSL
ATLAYEGRRPGFAHAQLIAALQILQQGDITPEKMLGSWAGAMGQTQFIPTTYNTHAVDFD
GDGRRDIWGSPADALASTAHYLQSSGWQRGQPWGFEVQLPSGFNYTLADGAIRKSVAEWR
QLGVNLPNGAQVPAGSEQLSAALLLPAGYRGPAFLILDNFRAILKYNNSSSYALAVSLLS
ERFEGAGLINGDWPKDDLPLSRTERIELQTLLSARNYDAGTADGIIGANTRKAIRSAQQA
LGWPADGYPTHKLLESLRAQ